RNA id: TU141155


Basic Information

Item Value
RNA id TU141155
length 485
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G104478
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18215606 ~ 18216090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttcacGCAAGTTAACTATAGGCTGGGCTTGGGTTTacattggcaaatgtgtcccccccaatatcaagcccgctcctacgcccttaaCCTAAAATGATTTTCCATGGTAAGTGAAATCACCTGAGACCTTAAATAACTTTTCCTATTGCAAACCAAGTGGCCTTTGTAAATGTTTCAATCCTCCAGTCCTCTCTTATTAGTGAATGATGATCACTTGAGAGCTGTCTCGTTTGAAAATAGCTTCTATTTCCTGTAAAACTGATGTTTACTCTTCAGGTTGTGGCTTTTGTATCATGGCAACAATGTTTGTACAGacatatacagtaaaacacatttttttaaacagatattttatttttttccccataatGTTTTTCCACGATCACTTTATTTGGTAATCCTGCCGTATGGACCAACAGTATCTTGTcatgtggcaaaaaaaaaaaaatcctttaaaatcaAATTTCACAGTCTGTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141147 lncRNA upstream 135 18215096 ~ 18215471 (+) True G104474
TU141106 lncRNA upstream 24396 18188710 ~ 18191210 (+) True G104446
TU141107 lncRNA upstream 24396 18188710 ~ 18191210 (+) False G104446
TU141109 lncRNA upstream 24396 18188710 ~ 18191210 (+) False G104446
TU141111 lncRNA upstream 24396 18188710 ~ 18191210 (+) False G104446
TU141160 lncRNA downstream 29545 18245635 ~ 18246339 (+) True G104482
TU141161 lncRNA downstream 41507 18257597 ~ 18269488 (+) True G104483
TU141162 lncRNA downstream 41507 18257597 ~ 18279808 (+) False G104483
TU141188 lncRNA downstream 145942 18362032 ~ 18448106 (+) True G104499
TU141192 lncRNA downstream 168785 18384875 ~ 18394066 (+) True G104502
XM_022674813.1 mRNA upstream 734 18192698 ~ 18214872 (+) True LOC103032036
XM_022674810.1 mRNA upstream 133144 18009302 ~ 18082462 (+) False LOC103032361
XM_022674388.1 mRNA downstream 120055 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 188416 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 188417 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 262989 18479079 ~ 18566714 (+) False arhgap6
XM_007254802.3 mRNA downstream 426618 18642708 ~ 18742642 (+) False mid1
TU140760 other upstream 1088296 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1321883 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1707829 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1757397 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3523407 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 702970 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2773183 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2802948 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3111102 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4593989 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile