RNA id: TU141162


Basic Information

Item Value
RNA id TU141162
length 609
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G104483
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18257597 ~ 18279808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaaacattgtttgatcaggcatgtgactaacacagactctattatatgacaaattaacccacattaacatataacatatgagatgtagctcaggcttgaagtattttgttttactgcatgaccctaactaacggtcatcaattcgactggtacggggctaatttgctacaaaaaggctattagatcaaagcagccttttggtgagtgagtgcctccctaaaaaacctctgcttcaaagcggggggtgacgcacacacacagatagtgccaggatggaagaacacagtcaaggtcaaacactagtggtcctgtcagACAcgtgcatgctaacatgagatgattttaacaacgcctcatcaacaggcttacgtcattttgggtataaaacatggagtcagatcagaggggggtcagaacttatgctgggacggctgttagacggtctttcatgtgtgggttctcctgaatattcagcactttgtaataaatacctggtttgctttcaacttcactccactgtctgactctctctatcaaacgaacacgcaggggagttgtaccccggacgagaggtgggagtagcccacctttcattttAATTTCTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141160 lncRNA upstream 11258 18245635 ~ 18246339 (+) True G104482
TU141155 lncRNA upstream 41507 18215606 ~ 18216090 (+) True G104478
TU141147 lncRNA upstream 42126 18215096 ~ 18215471 (+) True G104474
TU141109 lncRNA upstream 66387 18188710 ~ 18191210 (+) False G104446
TU141188 lncRNA downstream 82224 18362032 ~ 18448106 (+) True G104499
TU141192 lncRNA downstream 105067 18384875 ~ 18394066 (+) True G104502
TU141228 lncRNA downstream 167981 18447789 ~ 18510642 (+) True G104534
TU141195 lncRNA downstream 289643 18569451 ~ 18573387 (+) False G104504
TU141196 lncRNA downstream 289643 18569451 ~ 18573534 (+) True G104504
XM_022674813.1 mRNA upstream 42725 18192698 ~ 18214872 (+) True LOC103032036
XM_022674810.1 mRNA upstream 175135 18009302 ~ 18082462 (+) False LOC103032361
XM_022674388.1 mRNA downstream 56337 18336145 ~ 18337262 (+) True LOC111193482
XM_022674818.1 mRNA downstream 124698 18404506 ~ 18566714 (+) False arhgap6
XM_022674817.1 mRNA downstream 124699 18404507 ~ 18566714 (+) True arhgap6
XM_022674819.1 mRNA downstream 199271 18479079 ~ 18566714 (+) False arhgap6
XM_007254802.3 mRNA downstream 362900 18642708 ~ 18742642 (+) False mid1
TU140760 other upstream 1130287 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 1363874 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 1749820 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 1799388 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 3565398 14691043 ~ 14692199 (+) True G103561
TU141369 other downstream 639252 18919060 ~ 18923203 (+) True G104656
TU142294 other downstream 2709465 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2739230 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 3047384 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 4530271 22810079 ~ 22820096 (+) False LOC103038624

Expression Profile