RNA id: TU141369


Basic Information

Item Value
RNA id TU141369
length 3708
RNA type TUCP
GC content 0.48
exon number 3
gene id G104656
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18919060 ~ 18923203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caatgatattcattgtttatttttataacataGTGAAAGAAATTGCTCAAAAAGGTACATCTTGCATTCAGATAGCCTTACACAAGTATAGGGGTTGGGACTTTAAAATCTTAGGCTTTTTTAAATAACGaacatgctttaaaataaagtatatctCCAATATCTTTTGATTTACTTAggaataatattataaaaataaactctgtatttacaaaaaacttgCATAATATACACAGAATTCTTAACAAAGTCATCTGATTGCTTAAAGTTGTGGTAAAGACCAATACTGACAGGAAAGATGCGTTTTtcttaaatacataaacatttttaatacctatacatttttaaacagttgCCGTAGAGTGCAGTGTTAATAACAGCCATTGATAGTCTTTATTATTCGAGGGCTGTGTTGCTTCTCACACTTCATCCGTGGGACAGAGTGGTGTTGTTGTTGGCGAATACACTGGGATGGTCACATCATTGATCTCTCGTACCCTGATTGGCTGTGGTGGGGGAACTAATACATAGTCATATTCTCTGTGCAGAACCTTTTCGTAGACACTTTGAAGGCCCACTGTTTTTGGTATGTGGGCCTGGTAGTAGTTCTCCCTCCTGACAGAGTCTCTGGGAAGTGAGCCGGTCTTTGCAGAGCTGTTGCTCGCCCTAGTGGCGGTTGGGCTCCAGCAACGGTCGGAGTGGCCAAGGATCTTGCACTCACTGGTACATGCCCACAGAGCATTTTGAGCATTGTTTTGGTGTCCATCTTTCTTCAGACCATCACCACTGATGTCTGAATCACTGTCATTGAAATCGCTGTCTCCCTTCCCACTGTCTTTCCCGCTGAACTGAGGATCCCTTGCAGAAACTGTGGTGTAAGAGTTGCCTTTCCATATTGTAATTGGCCTCACGGGTTCTTTGCCATAGCCAGGCAGAGTTGAATATCCCTCAAGTTTTGCTCCACGGCTTTTGTTTTCTGATTCGTACACGCAGGTGGTCTCTGTGCCATCCTCAGAGCTGCAGCACATGTCACTTCCCGCTTGAATGGAACCAGAGAAGCTGGGTTTGTTGGTGTACGGGTTTACATCAAATACGCCATCGCCATGGACTGGTATGAGGGGGTCACTGTTGTTTTTCCCTCCCTCCAGGTTCATGCCGTCTTCCTTTTCAGAGTGGAAGCCATCCCGCCGCTTGTCCAGCTTCCGCTTGTTGCAACTTGTTGCAATTACAATGATGGCTAAGAGCAGCAATGTGCAGCTTCCTGCCAGAACAACAATGATAACAATGGAGAGGTCCCACTCATGAACTTCATCATCTTCGCTGCCTCGTCGGaatatatttcgctcattaggGGGTGCTCCTGCAATGATGGTAAAGCGGATGGTGGCCGTCGAAGTCAGTGAAGGTCTCCCATTGTCGCTCACAGTTACTGTGACTTTTAGGCTCTCGTCAACTTCGTAGTTCAGCTCACGGTTAAGGTAGATCTCCCCAGTGGCTCTGTTGATGGAAAACACTGAGATTTCACCTGCGGCGATTTTGTAGGACAGCTCTGCATTGACGCCCTCATCAGCATCCCGGGCATTTATCTGGGTTACCACATACCCCGAAGGGGCATCTTTTGGCAGGAGAACTTCTGCGGAGCCATTATTAAGCACTGGCTGTGTGATAGAGGGAGCATTGTCATTTTGATCAACTATACGCAGATTGACCGTTGCACTTCCATGGAGTTGTGGCGACCCACCATCACTTGCTTGAATTCGCAGATCAAGTTGCTTTAAAACCTCATAATTAAAACTCCGAAGAGCGTAGATGGAGCCTGTGGCAGGGTCCAGAGAGACGAATGCTGATACTGGAGAACCCATAACATAGGTCTCTGCAAGTTTATAGCTGACTTTGCTGTTTTGCCCCAAGTCCAGGTCCCTGGCCACCACTGTGGTTATGTATGCACCTGGTGCATTGTTTTCCACTATAGAAACTTCATAGATTGGTTTGCTAAACATAGGTGCATTGTCATTTTCATCACTTAGCCTAATGGTGTACTGTGTAATTGTTCTGAAAGGGGGGGAGCCAAGGTCTTCAGCCACCACAGTTAAATTATATTCTGCAATTTTCTCTCTGTCAAGAGCAGCTGTGGTCACAATCATATAGCTGTCCTCATAAGCTTGTTGGAGTTTGAAGTGGTCGTGCCCATACAGTGTGCAGTGAACCTGGCCATTGGCACCTGAGTCCCTGTCTGTGGTGCTGATCAGCGCCACAAAGCTGTCCTTGCTGGCTGCCTCTGTGATATGTGCAATTCCTGCTGTGATGGAGGTCATCGGGGTGATGGTGATTTCTGGTGCATTGTCATTTACATCCTGCACCTGCACAATGATTTTGCAGACAGTCGGTGGGCTGGGGTTAGAACCCAAGTCAGATGCCTGAACATCAAACTCATATGTTGTTTTGCTTTCAAAGTCGATCTGACTCTCCAGGGTTAGGCGGCCAGATTTTCTGTCCACTTTGAAAAGCTGCCGGATCTCTGATGGCACTTGATTGCTGAACCCATAAACAACTTCCCCATTCATGCCCTCGTCCGGGTCGACAGCATTCAGATCGAGCAGCAGGAATCCCACTGGTGCGTCCTCTGGTATTTCAACTGAGAAATTGTTGCGGTCAAAGACGGGGCTGTTGTCATTGTAGTCTTTCACCTTGATGTTGATCTTTGCGGTGCCAGACCGTGGCGGGTTACCTCCGTCAGTCGCGGCCAGTTCCAGGATGAAGGACGCCTGTGCCTCCCTGTCCAGTTCTTTCATTAACACCAGCTCCGCATATTTAACCCCATCAGCTCTGCTCAGCATGTCAATGGTGAAGTGGCTGTTGACAGAGATTTGGTAGCTCTGAATGTAGTTTGTGCCCACATCTTCATCCACTGCCACATCCAGGGGTATCCGTGTACCCACTGCTGTGTTTTCTGAGATTTCCAGAGTGGATTCCTTTCTGGGAAACTCGGGAGAGTTGTCATTGATGTCCTTCACCTCCACTTCTACAtgtatcagtttaaactgttcTTTAGAGAAACTCACCACGTCGAAAGCGATGAGACACTGAGTCGTGTGCTTGCAGATCTTCTCCCGGTCGATTCGCTCCCCGATGGTGAGCTGCCCGTCGCTCTCGCGCAGCCGGATAAAAGAAGCGTTAAACTGTTTCATCATCCTGAAATTGGCCTTGGAGCCAGTAGAGGGAATTTGTGCCATGTCCTTTGCCAGGTTTCCGATGACGGTCGCCGGTGCGTCCTCTTCGTGTGTTTGGTACTTCATGGTCCTGCCCGCGGCGAGTGCTGGCAGGACGGGCAGTGACAGAAAGGTGAAAGCGAGCATCCACGCGGCTGCGCTGCTTGGATTGCCTCCCATGATAACTGTACCGCTCTACCGGAGCGAAATGCGtcttcaaaaaacaaaaaaaaaagggaaaaactcGCTGTAGAGTTAAATTTTCCTTTTTGCTTGTCCGTCACATGAGGTCGGTCGGACCCGCGtagaacaaaaaaatcaaaagtcTCGTTTGCCCGATCAGTTTCACTCTGTCACTTGCTCTTTCTCgcgctctctcgttctctctctcttcactgcGTGCGCGCGCGCTGCCGTGTCCGCGCCCCCTGAAGCTTTAAACGCAACTGGAGAGCTCTGCAGTGTCGGGGCGGTTTATAGACAGCCTCATGCAAATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141286 lncRNA upstream 269985 18648215 ~ 18649075 (+) True G104588
TU141196 lncRNA upstream 345526 18569451 ~ 18573534 (+) True G104504
TU141195 lncRNA upstream 345673 18569451 ~ 18573387 (+) False G104504
TU141228 lncRNA upstream 408418 18447789 ~ 18510642 (+) True G104534
TU141188 lncRNA upstream 470954 18362032 ~ 18448106 (+) True G104499
TU141371 lncRNA downstream 6832 18930035 ~ 18930393 (+) True G104658
TU141374 lncRNA downstream 17895 18941098 ~ 18956053 (+) True G104660
TU141384 lncRNA downstream 75332 18998535 ~ 19026586 (+) True G104667
TU141381 lncRNA downstream 103949 19027152 ~ 19029365 (+) True G104666
TU141400 lncRNA downstream 107814 19031017 ~ 19031311 (+) True G104680
XM_015607258.2 mRNA upstream 23529 18860729 ~ 18895531 (+) False sugt1
XM_007254805.3 mRNA upstream 23529 18860730 ~ 18895531 (+) True sugt1
XM_022674823.1 mRNA upstream 60697 18827279 ~ 18858363 (+) False LOC103031957
XM_022674822.1 mRNA upstream 60697 18837322 ~ 18858363 (+) True LOC103031957
XM_022674821.1 mRNA upstream 60697 18840973 ~ 18858363 (+) False LOC103031957
XM_007254869.3 mRNA downstream 85363 19008566 ~ 19012966 (+) True LOC103024565
XM_007254808.3 mRNA downstream 91203 19014406 ~ 19022921 (+) True LOC103033226
XM_022674828.1 mRNA downstream 110202 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA downstream 110220 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA downstream 110220 19033423 ~ 19050916 (+) False LOC103024880
TU140760 other upstream 1791750 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2025337 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2411283 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2460851 16451175 ~ 16458209 (+) True G104000
TU139988 other upstream 4226861 14691043 ~ 14692199 (+) True G103561
TU142294 other downstream 2066070 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2095835 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2403989 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3886876 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4992432 23915635 ~ 23923771 (+) True G106017

Expression Profile