RNA id: TU141374


Basic Information

Item Value
RNA id TU141374
length 244
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G104660
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18941098 ~ 18956053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTAAAAGAGaaactgttggacacacccagtatgcaaatagattgtgacagaagccaatggaaaagaagctgccaatggcaacagactaaactcagttattataagttgattcaactcaaagatctcagtttaagtgtatatgtgcccacgaatgttcaactaactcaaaatagttgagtaatgtttagaaatttccaattttatgtaaaacagacttaatttatttgaattcaAACAACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141371 lncRNA upstream 10705 18930035 ~ 18930393 (+) True G104658
TU141286 lncRNA upstream 292023 18648215 ~ 18649075 (+) True G104588
TU141196 lncRNA upstream 367564 18569451 ~ 18573534 (+) True G104504
TU141195 lncRNA upstream 367711 18569451 ~ 18573387 (+) False G104504
TU141228 lncRNA upstream 430456 18447789 ~ 18510642 (+) True G104534
TU141384 lncRNA downstream 42482 18998535 ~ 19026586 (+) True G104667
TU141381 lncRNA downstream 71099 19027152 ~ 19029365 (+) True G104666
TU141400 lncRNA downstream 74964 19031017 ~ 19031311 (+) True G104680
TU141402 lncRNA downstream 74964 19031017 ~ 19031273 (+) False G104680
TU141432 lncRNA downstream 162601 19118654 ~ 19120266 (+) True G104702
XM_015607258.2 mRNA upstream 45567 18860729 ~ 18895531 (+) False sugt1
XM_007254805.3 mRNA upstream 45567 18860730 ~ 18895531 (+) True sugt1
XM_022674822.1 mRNA upstream 82735 18837322 ~ 18858363 (+) True LOC103031957
XM_007254869.3 mRNA downstream 52513 19008566 ~ 19012966 (+) True LOC103024565
XM_007254808.3 mRNA downstream 58353 19014406 ~ 19022921 (+) True LOC103033226
XM_022674828.1 mRNA downstream 77352 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA downstream 77370 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA downstream 77370 19033423 ~ 19050916 (+) False LOC103024880
TU141369 other upstream 17895 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 1813788 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2047375 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2433321 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2482889 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 2033220 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 2062985 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2371139 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3854026 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4959582 23915635 ~ 23923771 (+) True G106017

Expression Profile