RNA id: TU141384


Basic Information

Item Value
RNA id TU141384
length 1498
lncRNA type read_through
GC content 0.44
exon number 5
gene id G104667
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 18998535 ~ 19026586 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttttttttcTCAGTTCAAGAGCATATTTATTAGCTTCACAACCGTATTTAATGAGCTTTACTTCattagaaaagtgcattttagtctagtttctTAGCTGCTTTCTGCTTCAGTCTCTTCTGAAGTAGAAGAAGGTCAGTGTACACCACTTGTCCCAAAACAGTGGAGGCACAGAGGAGTCCACCATGTAACGCTCCAGAATAACCAGTGCTGAACACATCTTGACCTGAAAaggtagaggttcttaatgggtGTAGAGCACCTGATCTTGGCAATGTTCAAAGGTTTGTAGCGGTCCAGATTGTGCTCGGCTGACAGAATTGATCCTGCTGGGGCTCCCATTCCGTGGGCATTGATTGGTCCAACTGCATGCAGCACTGACAACTTGCCTTCAGCTTAGGGAAGCGGACACACGACCAGTCAAAGAGCTGGTTGGTGAATCTCATCTTGTAATGTTCATACTGATCCTGCCCCACAGGAAGGTCCTTCCATTGTTCAAACCACTCGTATTTCACCAAGGTATGGATCACCATGCATGACTTGCCTAAGGGGTCAgggatatttaaaatataaataaaaaataaaaaaaattgctacAATTCACAGTAATAGTGTGCAGCCTACCTGGGAAACGTTGCTTCCAGCTGGGGTCTTTAGCAGAAGGGAAAGATATAAACATCATAGGGATCTTCTCAGGTGCCTCCTCTTTATTCAAGTGGTAGTACACCTCCAACCTTGAAACAGACCACTAATTTAATTTTGAACTCTGGGAACTAGCCCCTCTTACATAAACAGGAGGAAAGACTAGGGTCTTACAGGTCATCCAGATCATTGCTCTTGAAGAGCCACATGTTTGTAGATGTAATGCCAAGTTCCTCTTGAGTGGCATCAAAGCCTGCAAACACCTGGAAGGATGCCTTGCTGAGTTTTAAACCATGCAGGCAATTCTTCATCtctgaaagacagaaagaggaaCTTGTTCAAATGCTCAAATCAACTTGATCCAACCATTGAGGCTTTAAAATAGTACCTGGCTTGGTTATGATCTCAGGGGGCAAGAGAGTCTGAAAGGTGGTGAACACACTAGTGCTGGAAATGACAACAGAAGCTTTAATGCTAATCTGCTCACCGCCTTTCTTCACGGTCACACCATGCAGCACCAGCATCATTTACCAGAATCTGAGAGACTGGAGCTTTGACCAGCACTTTTCCTCCATGCTTTTCAATGGTCTGAATGATGCGGTAAGGGATTTCCCCAGCTCCTCCTTTTGGGTAGTATGCACCACGCTTGTAGTGATGGAACAGCAATGCattgatcatgcagcttgcattATTGGGTGGAACACCTGGATGTTTGGTGGGAAAAGGACATTGCAAAGCTTAAGAAAACAGTTAGAACATTTCTGGCTCAAAGTCTGGTGAGCTTGAGACATACAGCTCATGTTAGGTCTGCAACATCACTAAGTTGCATTGGGATTTTAGGTCATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141374 lncRNA upstream 42482 18941098 ~ 18956053 (+) True G104660
TU141371 lncRNA upstream 68142 18930035 ~ 18930393 (+) True G104658
TU141286 lncRNA upstream 349460 18648215 ~ 18649075 (+) True G104588
TU141196 lncRNA upstream 425001 18569451 ~ 18573534 (+) True G104504
TU141195 lncRNA upstream 425148 18569451 ~ 18573387 (+) False G104504
TU141381 lncRNA downstream 566 19027152 ~ 19029365 (+) True G104666
TU141400 lncRNA downstream 4431 19031017 ~ 19031311 (+) True G104680
TU141402 lncRNA downstream 4431 19031017 ~ 19031273 (+) False G104680
TU141432 lncRNA downstream 92068 19118654 ~ 19120266 (+) True G104702
TU141436 lncRNA downstream 121118 19147704 ~ 19150962 (+) True G104706
XM_015607258.2 mRNA upstream 103004 18860729 ~ 18895531 (+) False sugt1
XM_007254805.3 mRNA upstream 103004 18860730 ~ 18895531 (+) True sugt1
XM_022674822.1 mRNA upstream 140172 18837322 ~ 18858363 (+) True LOC103031957
XM_022674828.1 mRNA downstream 6819 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA downstream 6837 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA downstream 6837 19033423 ~ 19050916 (+) False LOC103024880
XM_022674829.1 mRNA downstream 30812 19057398 ~ 19067487 (+) True LOC111193549
XM_022674833.1 mRNA downstream 142297 19168883 ~ 19309236 (+) False LOC103025512
TU141369 other upstream 75332 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 1871225 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2104812 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2490758 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2540326 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1962687 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1992452 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2300606 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3783493 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4889049 23915635 ~ 23923771 (+) True G106017

Expression Profile