RNA id: TU141400


Basic Information

Item Value
RNA id TU141400
length 295
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G104680
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19031017 ~ 19031311 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATACAGCGCTTCAGCTGCAGCTCAGCGAGGGGTTTACAGAGCCCGTGACCGGCTCCTCCGCTGCGGGCGCTTCTAACTCAGCGCTGGTGTTTTAATTAAGCTTCATCCAGGACCGACACAGCGAGTAAAACACGGGGAATGGATAACTGCGCTCGCTTCAGGGACGAAAAGTACAAAAACTGGCTGAAAGCGGCCGAGAGTCTCTACATCCTGAGAAACAGCATTCGCGACTTCGTCGAAAACGAAACCGAAACTCTTCACAAGACTTTACGTAAAAAACTAAATAGCGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141381 lncRNA upstream 1652 19027152 ~ 19029365 (+) True G104666
TU141384 lncRNA upstream 4431 18998535 ~ 19026586 (+) True G104667
TU141374 lncRNA upstream 74964 18941098 ~ 18956053 (+) True G104660
TU141371 lncRNA upstream 100624 18930035 ~ 18930393 (+) True G104658
TU141286 lncRNA upstream 381942 18648215 ~ 18649075 (+) True G104588
TU141432 lncRNA downstream 87343 19118654 ~ 19120266 (+) True G104702
TU141436 lncRNA downstream 116393 19147704 ~ 19150962 (+) True G104706
TU141444 lncRNA downstream 174115 19205426 ~ 19205714 (+) True G104712
TU141465 lncRNA downstream 291697 19323008 ~ 19323230 (+) True G104729
TU141550 lncRNA downstream 502723 19534034 ~ 19534314 (+) True G104798
XM_007254808.3 mRNA upstream 8096 19014406 ~ 19022921 (+) True LOC103033226
XM_007254869.3 mRNA upstream 18051 19008566 ~ 19012966 (+) True LOC103024565
XM_015607258.2 mRNA upstream 135486 18860729 ~ 18895531 (+) False sugt1
XM_007254805.3 mRNA upstream 135486 18860730 ~ 18895531 (+) True sugt1
XM_015607257.2 mRNA upstream 172654 18848085 ~ 18858363 (+) False LOC103031957
XM_022674828.1 mRNA downstream 2094 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA downstream 2112 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA downstream 2112 19033423 ~ 19050916 (+) False LOC103024880
XM_022674829.1 mRNA downstream 26087 19057398 ~ 19067487 (+) True LOC111193549
XM_022674833.1 mRNA downstream 137572 19168883 ~ 19309236 (+) False LOC103025512
TU141369 other upstream 107814 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 1903707 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2137294 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2523240 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2572808 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1957962 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1987727 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2295881 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3778768 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4884324 23915635 ~ 23923771 (+) True G106017

Expression Profile