RNA id: TU141432


Basic Information

Item Value
RNA id TU141432
length 417
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G104702
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19118654 ~ 19120266 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gataaaatacaaaatacacacctactgtacatataaacacatagaaaaacacactgttcatttaaacactgtacaaataaacacattgcGTTAAGTTAAACACCACAGGAAAGATACTACTCGTAGTCTAAAATACCGAATCagaattttcagatttttcaatTTCCAATTCAGGCCACTTCAAAATGTGGTTCTGAAATCCAATACAGATCTGATTTGCAGCAATGTGAGGAACATAAGCACACAATGGGAAAATGGATGTGAGGAGATTAAgaaacagACAACAGCAGTGAGTGAGGGTTTCAGTGCTGGATCAGTGAGGTAACAAACCTCATAAATATGTATTAGTtcagtatttaataaaatattctcttaaaggagaactctggtgtaaaatggacttttggtgtagtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141400 lncRNA upstream 87343 19031017 ~ 19031311 (+) True G104680
TU141402 lncRNA upstream 87381 19031017 ~ 19031273 (+) False G104680
TU141381 lncRNA upstream 89289 19027152 ~ 19029365 (+) True G104666
TU141384 lncRNA upstream 92068 18998535 ~ 19026586 (+) True G104667
TU141374 lncRNA upstream 162601 18941098 ~ 18956053 (+) True G104660
TU141436 lncRNA downstream 27438 19147704 ~ 19150962 (+) True G104706
TU141444 lncRNA downstream 85160 19205426 ~ 19205714 (+) True G104712
TU141465 lncRNA downstream 202742 19323008 ~ 19323230 (+) True G104729
TU141550 lncRNA downstream 413768 19534034 ~ 19534314 (+) True G104798
TU141551 lncRNA downstream 414190 19534456 ~ 19536048 (+) True G104799
XM_022674829.1 mRNA upstream 51167 19057398 ~ 19067487 (+) True LOC111193549
XM_022674828.1 mRNA upstream 67738 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA upstream 67738 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA upstream 67738 19033423 ~ 19050916 (+) False LOC103024880
XM_007254808.3 mRNA upstream 95733 19014406 ~ 19022921 (+) True LOC103033226
XM_022674833.1 mRNA downstream 48617 19168883 ~ 19309236 (+) False LOC103025512
XM_022674832.1 mRNA downstream 126656 19246922 ~ 19309236 (+) True LOC103025512
XM_022674389.1 mRNA downstream 289041 19409307 ~ 19411213 (+) True LOC103035666
XM_022674834.1 mRNA downstream 292754 19413020 ~ 19419379 (+) True LOC103025817
XM_007254820.3 mRNA downstream 305117 19425383 ~ 19457166 (+) False LOC103036301
TU141369 other upstream 195451 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 1991344 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2224931 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2610877 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2660445 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1869007 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1898772 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2206926 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3689813 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4795369 23915635 ~ 23923771 (+) True G106017

Expression Profile