RNA id: TU141444


Basic Information

Item Value
RNA id TU141444
length 241
lncRNA type intronic
GC content 0.37
exon number 2
gene id G104712
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19205426 ~ 19205714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actttacgtggatggtccattttatggccttgttgatgctcaactgacattcaactaacactgaattgaatgtccattaaatttaacttaaccctatgttgaatgtaaatgattcaaaatagaacctaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatctaaccctacacctaaccctaaccttaacccttaatcaaccctaaaatctaaccctacacctaaccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141436 lncRNA upstream 54464 19147704 ~ 19150962 (+) True G104706
TU141432 lncRNA upstream 85160 19118654 ~ 19120266 (+) True G104702
TU141400 lncRNA upstream 174115 19031017 ~ 19031311 (+) True G104680
TU141402 lncRNA upstream 174153 19031017 ~ 19031273 (+) False G104680
TU141381 lncRNA upstream 176061 19027152 ~ 19029365 (+) True G104666
TU141465 lncRNA downstream 117294 19323008 ~ 19323230 (+) True G104729
TU141550 lncRNA downstream 328320 19534034 ~ 19534314 (+) True G104798
TU141551 lncRNA downstream 328742 19534456 ~ 19536048 (+) True G104799
TU141564 lncRNA downstream 337989 19543703 ~ 19558989 (+) True G104809
TU141571 lncRNA downstream 354319 19560033 ~ 19560591 (+) True G104811
XM_022674829.1 mRNA upstream 137939 19057398 ~ 19067487 (+) True LOC111193549
XM_022674828.1 mRNA upstream 154510 19033405 ~ 19050916 (+) True LOC103024880
XM_022674826.1 mRNA upstream 154510 19033423 ~ 19050916 (+) False LOC103024880
XM_022674827.1 mRNA upstream 154510 19033423 ~ 19050916 (+) False LOC103024880
XM_007254808.3 mRNA upstream 182505 19014406 ~ 19022921 (+) True LOC103033226
XM_022674832.1 mRNA downstream 41208 19246922 ~ 19309236 (+) True LOC103025512
XM_022674389.1 mRNA downstream 203593 19409307 ~ 19411213 (+) True LOC103035666
XM_022674834.1 mRNA downstream 207306 19413020 ~ 19419379 (+) True LOC103025817
XM_007254820.3 mRNA downstream 219669 19425383 ~ 19457166 (+) False LOC103036301
XM_022674835.1 mRNA downstream 219669 19425383 ~ 19447033 (+) True LOC103036301
TU141369 other upstream 282223 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2078116 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2311703 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 2697649 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 2747217 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1783559 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1813324 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 2121478 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3604365 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4709921 23915635 ~ 23923771 (+) True G106017

Expression Profile