RNA id: TU141550


Basic Information

Item Value
RNA id TU141550
length 281
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G104798
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19534034 ~ 19534314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgagaccacttcagtttgaatcagtttctctgattttgctatttatatgtttgagtaaaatgaacgttgtggttttattctatccTGACAAATTATTTGGaatatcatttagagcatttatttgcagaaaatgagaaatttcagacctcaaataatgcaaagaaaacaagttcatattcatacagttttaagagttcagaaatcaatatttggtggaatcctggtttttgatcacagttttcatgcatcttggcatgttctcctccaccagtcttacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141465 lncRNA upstream 210804 19323008 ~ 19323230 (+) True G104729
TU141444 lncRNA upstream 328320 19205426 ~ 19205714 (+) True G104712
TU141436 lncRNA upstream 383072 19147704 ~ 19150962 (+) True G104706
TU141432 lncRNA upstream 413768 19118654 ~ 19120266 (+) True G104702
TU141400 lncRNA upstream 502723 19031017 ~ 19031311 (+) True G104680
TU141551 lncRNA downstream 142 19534456 ~ 19536048 (+) True G104799
TU141564 lncRNA downstream 9389 19543703 ~ 19558989 (+) True G104809
TU141571 lncRNA downstream 25719 19560033 ~ 19560591 (+) True G104811
TU141629 lncRNA downstream 155786 19690100 ~ 19690589 (+) True G104841
TU141689 lncRNA downstream 172332 19706646 ~ 19710814 (+) False G104891
XM_007254821.3 mRNA upstream 1162 19482626 ~ 19532872 (+) True LOC103036999
XM_007254820.3 mRNA upstream 76868 19425383 ~ 19457166 (+) False LOC103036301
XM_022674835.1 mRNA upstream 87001 19425383 ~ 19447033 (+) True LOC103036301
XM_022674834.1 mRNA upstream 114655 19413020 ~ 19419379 (+) True LOC103025817
XM_022674389.1 mRNA upstream 122821 19409307 ~ 19411213 (+) True LOC103035666
XM_007254874.2 mRNA downstream 28365 19562679 ~ 19576104 (+) True LOC103026133
XM_007254830.3 mRNA downstream 43975 19578289 ~ 19591937 (+) True LOC103040050
XM_022674839.1 mRNA downstream 59995 19594309 ~ 19607808 (+) True LOC103034347
XM_022674838.1 mRNA downstream 89114 19623428 ~ 19648111 (+) True LOC103026741
XM_022674837.1 mRNA downstream 125691 19660005 ~ 19684150 (+) False LOC103039332
TU141369 other upstream 610831 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2406724 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2640311 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 3026257 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 3075825 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1454959 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1484724 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1792878 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3275765 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4381321 23915635 ~ 23923771 (+) True G106017

Expression Profile