RNA id: TU141551


Basic Information

Item Value
RNA id TU141551
length 1593
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G104799
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19534456 ~ 19536048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taagtgagtggtctcttatttttttccagatttgtaAATATGGGGTTTATATGTTGAGACATTTTTGAGTTGTTAAGCTGAGAAGACGGCAAGGTcagatttttgtgtaaaacgaGGCGCCTTCGTAAATGTGTTGTGCACCATTAAAACTAATGTGTGAAGTAcctttacaattaaataaataaatcctcaaggcagaaaaaaacttaatcatttttttgtaaTCGAGGTACTTGATTTATTCAAGGAATCGTTTCACTCTGAGTCTCAAGgaatgtcaattaataattagttgagacattacccaaccatttaaaaatgtttattattattatcatatagATAGTTATTTGTtgcccttattgtaaagtgatCAGTTATAAATCTAAATATTCAATAATAATCATGTGTGCagctaaaaatgtttattttttattattgtttggtCTATTTTTAATGAATGCCAATTAGTGGTACTTAAACGTGTAAAAGTATGAATCCAGGTCTTATTTTGCGTAAATTATACACATGCTCAGGAAAATATTGTAGAATTTGATTTTCTTTCTGATCTAGATCCCACAAACTTTAATGAAtaccacattttttgtgtaaaaactgTCCTGGTACTATTTTTACAATaacgtttttaatttttatattaaataaaagtgttgCCAGCTCAATGTCACTGATTGACTGAGAACAGACCACAAATATTCAGTCAACAGCACCCAGTGGGCAGGGCAGTGTACTGTGGGCATCTACATCTACAAGATGGAGCATCTAGGCAGGAGTTTATAAGACGAGTGGAGGAGTTAGTGGAaacaagtgtttaaaaactccagcagcactgctgtctctgATCCACTTATATACCATAACAACATGGGCAAAATGGGtaaaacaaggaggtggtcattaTGTTATGACTGGACTGTGTATGAGTTAAGATATAGGACAGAtctgcatatatattttaatgtaaatttgctACTTGATAGCTGCTCGTACAAACATGAACAAGCCAATACGTTTGTGTGCTATAAGAGAATATTGCATATTGCTGTAAGTACTGTATTTATGCATTAGACATATATTTTTGGAGAATCTAAGACTatctataaatgtatgtatggcTTGagtgtgagtgaatgaatgatgGTGTGCATAGGAAGCAGAGTCAAATCTATAATCTATCAAACAAAATgtcttagtgttttgtttttccaaaagactttttaagatatttcatatacatacatatatatttttttctgcaacaTTGCTGCCAATCCTGTGTCCATGTATTACCTTATATATGTTTAGGGTGATTAAGTGTAACATGGTGGGTGTTACACACCAGTTACAGTAccttaattattcattattcaaaaATACTGCACCTCTGCCTctctatgtactgtatgtttataaGATGCTTTGTGTTTATGTTCCTACGATgcttgtatttatatttatgagaTGCTTCGAATAGTGTCTTAAGGCTGTAGCGCATAATTAAACATGCCTTTGCAGCTGCTCCAATATATATGAAGGTATTTGCAATCGCCACAGAAATCTGGTCATTTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141550 lncRNA upstream 142 19534034 ~ 19534314 (+) True G104798
TU141465 lncRNA upstream 211226 19323008 ~ 19323230 (+) True G104729
TU141444 lncRNA upstream 328742 19205426 ~ 19205714 (+) True G104712
TU141436 lncRNA upstream 383494 19147704 ~ 19150962 (+) True G104706
TU141432 lncRNA upstream 414190 19118654 ~ 19120266 (+) True G104702
TU141564 lncRNA downstream 7655 19543703 ~ 19558989 (+) True G104809
TU141571 lncRNA downstream 23985 19560033 ~ 19560591 (+) True G104811
TU141629 lncRNA downstream 154052 19690100 ~ 19690589 (+) True G104841
TU141689 lncRNA downstream 170598 19706646 ~ 19710814 (+) False G104891
TU141690 lncRNA downstream 170598 19706646 ~ 19709052 (+) True G104891
XM_007254821.3 mRNA upstream 1584 19482626 ~ 19532872 (+) True LOC103036999
XM_007254820.3 mRNA upstream 77290 19425383 ~ 19457166 (+) False LOC103036301
XM_022674835.1 mRNA upstream 87423 19425383 ~ 19447033 (+) True LOC103036301
XM_022674834.1 mRNA upstream 115077 19413020 ~ 19419379 (+) True LOC103025817
XM_022674389.1 mRNA upstream 123243 19409307 ~ 19411213 (+) True LOC103035666
XM_007254874.2 mRNA downstream 26631 19562679 ~ 19576104 (+) True LOC103026133
XM_007254830.3 mRNA downstream 42241 19578289 ~ 19591937 (+) True LOC103040050
XM_022674839.1 mRNA downstream 58261 19594309 ~ 19607808 (+) True LOC103034347
XM_022674838.1 mRNA downstream 87380 19623428 ~ 19648111 (+) True LOC103026741
XM_022674837.1 mRNA downstream 123957 19660005 ~ 19684150 (+) False LOC103039332
TU141369 other upstream 611253 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2407146 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2640733 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 3026679 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 3076247 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1453225 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1482990 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1791144 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3274031 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4379587 23915635 ~ 23923771 (+) True G106017

Expression Profile