RNA id: TU141690


Basic Information

Item Value
RNA id TU141690
length 1051
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G104891
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19706646 ~ 19710814 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cTGTTTGGTGATCAATTTTTATTTGTACACAAAACACCAGAAAACAATTAGCGCTTGCCACCAACACGAGGAGCGCTGACCTTCATGGGCTTAGCGATCTTCTGTTTGGGTGCAGCCTTAGAAGGGGCCTTAGTACTCTGGGCAGGGACTTTCTTGGTGGCCTGCTTTGCCTTCTTGGCTTCCTTGGCAGCcctaaagagagaaagagctaatATGAATAACACACATGGACTACATGGGTAATCAAGCATTCAATCAAacgtgtttttttaataacgtGTAGTTGAATCACTTCAAAATCTCCAACTGTGTCCAATTCAAAGTGTAACTGGTTATTGAATACACTAAACGCCTACAACACTGGTCATTTAAGTGACCTGAAATTTCCTGGTAGatgctgcactgactttaggcATGATATAAGAGTGCACCAATAACAGCAGACATAACTCCTCAAACCACAAGCAACTTAGATTTTGTGCCACTTTTCCAGCACACTTTGGTACCATTAATTTCAAATGAAAGGTAAAATTTCCTTATGGTTAGTGATTGTTTGGGAAGCATCATCTGCTGGCATTGGTCCACAGGTAATTTTAGAGCACTTCATGTTGATTTCATTTTCTAACAGGACTTGGACCCTGCCCACACTGACTGAAGGAGCCGAGGTGAACTTAATCCATCCAATGCGATGCAGccatccaatcagagagcaggggTTTGCCTGATGCCCATCCTCCGTGCAGTGTATGAAAACAGtttagttccgctttcaagTGTTCCAGAGAAGACTGCGATTGCTGGGGTCTCCGGTGGGTTAGGAAAATAATATTGAATTTAACTGGAAGGTTTTGCTTTTGTTTGCCTATATGCTGCTTGCTAAAGTGTTATGAAGCTCAAAcgaaaatttatatttattagtttataggaaataaagcttgtataacaccatttcccatttattaaaatgactaaaacgGAACGACGCAGGGAACACCTTTGTAACGTCCACATGCAACCGGTTGAAAGGCCTGTGCATTTGTGCATAGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141629 lncRNA upstream 16057 19690100 ~ 19690589 (+) True G104841
TU141571 lncRNA upstream 146055 19560033 ~ 19560591 (+) True G104811
TU141564 lncRNA upstream 147657 19543703 ~ 19558989 (+) True G104809
TU141551 lncRNA upstream 170598 19534456 ~ 19536048 (+) True G104799
TU141550 lncRNA upstream 172332 19534034 ~ 19534314 (+) True G104798
TU141693 lncRNA downstream 34462 19743514 ~ 19744913 (+) False nfkbiz
XR_002650596.1 lncRNA downstream 73077 19782129 ~ 19782686 (+) True LOC111193552
TU141728 lncRNA downstream 104331 19813383 ~ 19862775 (+) True G104921
TU141731 lncRNA downstream 104331 19813383 ~ 19862112 (+) False G104921
TU141732 lncRNA downstream 104331 19813383 ~ 19863419 (+) False G104921
XM_007254827.3 mRNA upstream 3224 19688960 ~ 19703422 (+) True LOC103039009
XM_022674837.1 mRNA upstream 22496 19660005 ~ 19684150 (+) False LOC103039332
XM_022674836.1 mRNA upstream 22496 19660103 ~ 19684150 (+) True LOC103039332
XM_022674838.1 mRNA upstream 58535 19623428 ~ 19648111 (+) True LOC103026741
XM_022674839.1 mRNA upstream 98838 19594309 ~ 19607808 (+) True LOC103034347
XM_007254825.3 mRNA downstream 4524 19713576 ~ 19727108 (+) True cep97
XM_007254824.3 mRNA downstream 25174 19734226 ~ 19744924 (+) True nfkbiz
XM_007254833.3 mRNA downstream 71903 19780955 ~ 19791604 (+) True eed
XM_007254832.2 mRNA downstream 83822 19792874 ~ 19798191 (+) True hikeshi
XM_007254831.3 mRNA downstream 90541 19799593 ~ 19822020 (+) True ccdc81
TU141369 other upstream 783443 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2579336 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2812923 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 3198869 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 3248437 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1280221 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1309986 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1618140 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3101027 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4206583 23915635 ~ 23923771 (+) True G106017

Expression Profile