RNA id: XM_007254824.3


Basic Information

Item Value
RNA id XM_007254824.3
length 3731
RNA type mRNA
GC content 0.44
exon number 12
gene id nfkbiz
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 19734226 ~ 19744924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttaaaagtcttttctaGAGTCTTTTATGTAGTGTTTATGAACAGCATTACGTGAATGGATGCTAGGGCAGTAGGCGGAACCAAATGGCTTAGCGGAGGAAAGCCGTGTTCTCATTGGTCGACAGTTCTTTGGTCGACAGCACCAATGTCTAATTGGTCGACAGTcacatcatttatttatcatGGGCGGGGCTAAACCTGCCGGTTAAATAAATGCTCGGACTCGCTCTTGTCCCGTAGTTCAGTCCGGGTTAGTGTTCAGAGTCCTGAAAGCGATTAAAGATGATTATCGACCGAATCTCCGAGGGCTATTCAGCTGTTCTCGACAGAGACACAGATGTAATGACCAGTCCGGTTCATCTCTGGTCCTTTTACGGCTGCTCTTCTCCCGCCACGGAGCCGAGCAGCTGCAGCGGGCAGCAGTCGCCCTGGTCCCCGGGAGAGTCGGAGCGGAGCTGGGGCAGCGCGGCGAGTCCTCCGCTGACCGAGCTCGGACTGCAGGGCAGCGTTACCGtggACTCTCCCCTGGACGTTTTACAGCATTCAAGTCGGTACCAGGGAGTAAGAGTGAAAAATACAGTCAGGGATCTCATTATGCAGAAACGGAGCTGTGACATTCAGACACAGAAATCTAACAACGAAACAGAATTTCCagccaTAACACAATTGCTGCAGTCTGCAAAACGTAAATATGAGAGTGACTTTCCTCAAACTGTCCCTAAAAGGCCTGCTACTTCACAAAACAATGTGCtgtcTTCATGTTGTCTCAGCGAGATCATCCCAAAAGAACAAACCATCTGTACAGGTTTTGGTGACCTCTTCGGCAGTGGAGGCCTGTCTATCGACTCTGTGAAGGTACAGAGCAGTCCACTTCCAGAACCACAGGAGCCCCTGCCCACCTACTACACCACAACCCCCAGCCCCCAGTACTCCAGCTGCCAGCTCTCCCAGGTTCAAGAAAGCCCATACATGTCCCCTTTCCAAAGCCCGAGCCCACAGCAAGGCTTCACGCCCTGTGTGTCCACAGCCGCTCCAGTGTCTTTCTTCCAGTGGCAGAtccagcaggaggaggagaaacTAGCCAACTTGACCCCTCAGGACCTCATGTCCAAGGATGCTGATGGAGACACGTTCCTTCACATCGCAGTAGCCCAGGGGAGAAGAGCTCTGGCTTATGTGCTCGCAAAGAAAATGGCCGACCTTGGCATGCTTGACCTGAAGGAACATAACAATCAGAGTGCATTCCAAGTGAGTGTGGCAGCCAACCAGCACCTGATTGCACAAGACCTTCTCTCTCTGGGAGCCCAGGTGAACACTGCAGACTGCTGGGGCCGTTCCCCTCTGCATGTGTGTGCTGAGAAGGGCCACACCCTGACCTTACAGGCCATTCAAAGAGCGATGGACAACAATGGCCAGAGAGTGAATGTTGAAGCAGTGAATTATGATGGTCTCACCGCCCTCCACATTGCTGTCTTGTCCCACAATGCTGTGGTTCAGGAGCTGAGCCGTATAGGAGCTCCTCAGTCCCCACAAACCACAGCTCTGATGCAAAGAAGAAAGCTGCTCGGGGAATGTATCAACACTCTCCTGCAGATGGGTGCCTCGTATGGCACAACGGACCGTAAAAGTGGACGCACTGCCCTGCATATGGCTGCCGAGGAGGCCAACGTCGAGCTCCTGCGTCTTTTCCTGGATCAGCCAAACTCTTTCACTGTGGTCAATGCCAAGGCTTATAACGGGAACACAGCACTCCACGTGGCTGCAGCACAGCAGGGGCGGCAGGCACAGGTGCATGCGGTGCAGCTGCTGATGAGAAGAGGAGCTGACCCCAGTTCTAAGAACCTGGAGAATGAGCAACCCATTCAGCTGGTACCCGAAGGAACCGTTGGGGATCAGgTGCGTCGGATCCTGAAAGGCCGCTCTGCCCAGTCCCGGTCTTTTGTGCCGTAACAGGAGCCGACCCGCCGATCCCTTCCGTCAGAAACACTGTCAGTTAGGCAGTCCAATCTGTGTACAGTTTCATTTGCCGATATGAGGCAGATGTCAGTTGTTTCTATGAAACAATTACAGTTGTTCACTACTGCGTAGTTGAAGGAATATGGAGGTTGAGTCCAGAGCTAAAACGAATAGATCAGCCATCATCAAACGATTAGAAGAGTCAGGATTTTCTGATTCGTTTGTTGAGGGTTACATTAAAATTTGTTTAGCAATGGGCTCCGGATAGTAAAGGTttgttttgtattatatatatatattttttttatgttgatgtTGATTTGTAATTGTAAATGTACAGTGTTGCTgttgtcatgcaaaaaaaaaatcttgtatctcaaaacaaacaaacaaaaatagctttaaatatataaaggaTTTACTTCCAAGTCATTTGgatgcatttctattggtcaattcaaGATGACATTTGAAACTGATATAAATGTTCACTTTATTtctaaaagtgaaaaacaggaaAAGCTGAGTTACAAAGCTTTTGCATGACTGCAAtgataattttcttttttttttactctttttgcCATGTTTGAAGCAACAGTCCATAAGTTTTTTTGGAGGATTTGGGTGAGCAGATGAAgactctaaaatctaaaatctcaATTTCAGAGGCTGCGCATGAGATTTAAGTACGTCATGTGTAAATAAAGTCATGTGACGTGGACAgaaaaacctaccagaccactctgcttttagaataaatattttaaaatgttgcagTTTAACATACTGCAACATTGACACCatctattactgtattttttgcactactgCTCTGAAGGTCTGCTGCTTTAAAGATGAGCACAGTAAAAACCAGACTAatcacattgtaaaaaaaaaaaaaagttatttgttGGCTGTGTGATCTCATACAACctcttttttgacttttttggtGCTTGTCATCATGGTTGTGCAGCCTTCCATATCTTCTTTATCTGCTTTGAGATTAAGCTCGATCGTTAAAGCAGTTCTGCGCGTCATCCGTGCCAAGAAACTTTACGAAACACTGTCGATGACTTGAGAGTCAATGACTCATAAGATGTTCTGGCATGTCATCACCGAAAGTGTCTTCGAAAGCTCAGAATGTGAGCACACGGGGGAATTTTAGGTACGGTGTTTTAGTCAAGCGTTCGCTACTCCTTTTTATGAAacttctatatatatttttactgatatttttaaatattcagatGTAAGTTGATGTGTATAATTTGCTGATTTGCTTGTATCCCAGACATTTGCATCATAAATACAATTCAAGTCTACAGTGGTGTGGGTTAGGTAGAAGGGTTACTATTCacaacttttattgttgtttttgttgttacaATGACTAATGCTCTAAAGACAATACTGTAAATCTTTAACAATGATAATCTTGgcaatgggattttttttgttagttgtgttttttttttttttttttttttaatgtaatgaaatgttcTAATTTGATATTCCTGATGCTGGAAACATATTTGAAGGattttactttcttttattCACTGTATTGATGCATTGTGTATGTACCTTTTCTACATTTGTTAATCACTGAAATAACCTAAGCTATCTTAATTACACTGTTGGTGGAGTTTTAAGTATGTCTCATAGACAGATATTAAAAAGACAGTTTcggtttcttgttttttctttccatGTTTGTTATAATATAATTGTACACTGACACTTTAATAAAGGCTTGATAATGTCA

Function

GO: NA

KEGG:

id description
K14242 NFKBIZ; NF-kappa-B inhibitor zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141689 lncRNA upstream 23412 19706646 ~ 19710814 (+) False G104891
TU141690 lncRNA upstream 25174 19706646 ~ 19709052 (+) True G104891
TU141629 lncRNA upstream 43637 19690100 ~ 19690589 (+) True G104841
TU141571 lncRNA upstream 173635 19560033 ~ 19560591 (+) True G104811
TU141564 lncRNA upstream 175237 19543703 ~ 19558989 (+) True G104809
XR_002650596.1 lncRNA downstream 37205 19782129 ~ 19782686 (+) True LOC111193552
TU141728 lncRNA downstream 68459 19813383 ~ 19862775 (+) True G104921
TU141731 lncRNA downstream 68459 19813383 ~ 19862112 (+) False G104921
TU141732 lncRNA downstream 68459 19813383 ~ 19863419 (+) False G104921
TU141774 lncRNA downstream 201919 19946843 ~ 19947441 (+) True G104944
XM_007254825.3 mRNA upstream 7118 19713576 ~ 19727108 (+) True cep97
XM_007254827.3 mRNA upstream 30804 19688960 ~ 19703422 (+) True LOC103039009
XM_022674837.1 mRNA upstream 50076 19660005 ~ 19684150 (+) False LOC103039332
XM_022674836.1 mRNA upstream 50076 19660103 ~ 19684150 (+) True LOC103039332
XM_022674838.1 mRNA upstream 86115 19623428 ~ 19648111 (+) True LOC103026741
XM_007254833.3 mRNA downstream 36031 19780955 ~ 19791604 (+) True eed
XM_007254832.2 mRNA downstream 47950 19792874 ~ 19798191 (+) True hikeshi
XM_007254831.3 mRNA downstream 54669 19799593 ~ 19822020 (+) True ccdc81
XM_022674841.1 mRNA downstream 54675 19799599 ~ 19822019 (+) False ccdc81
XM_007254834.3 mRNA downstream 133851 19878775 ~ 19884491 (+) True prss23
TU141369 other upstream 811023 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 2606916 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 2840503 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 3226449 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 3276017 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 1244349 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 1274114 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 1582268 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 3065155 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 4170711 23915635 ~ 23923771 (+) True G106017

Expression Profile