RNA id: TU142287


Basic Information

Item Value
RNA id TU142287
length 1174
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G105271
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20828368 ~ 20860880 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGCTCATCCATCACCCAAACCCAAACCAGGAGCCGAGGAGATCCAGCTGTAGAGCAGAGGACCCTGTTTATCCACCCGCCCCCCGGCACTCAGCAGCTCCCTGTACCCCATGCTCGCTGTCCGGCCGCCGCGGAGCTCCCAGCCTCGGTCGGGTCCGGAGGGAGACCGAATGCGGCGGGTGAGGGTGAAGATGGAGTGCTGAGATGCTGAAATGctgtgaatgaataaataaggcATGAGCTCGGCTGCGGCCAGCCTGGCTCTGGGGCTGCTCGGGCCGACCGAGCGCAGTCGCTGCTGTCGACGCCGTTCCAGCTCAGCCTAGCGGCCCGCCGCCCGCCGCCCGCCTCGCTCTCCGCGCTCCAGCCGCCCGAGCAGCGCTGCGCCCCGGCGTGCCGAGTCGAGGAGCCCCGCGGGAAAGGGCCTCGGACCGCAGGTGAAGACCACTGAAACTACGGCGTTTTTTTGCGTTTGCGTTGTTTTTGGAGCGTAAATAAGAGGAGGATACCGACAGTGTTCGCCTGTGCTCGGTGAGGCTGAATgtcTCTCGACCTTCCACTGTTGCAGGATCCTGCATATCTCTGCCAGGTTGAGGCTCTGTTTTCTATCAATGGATATGTGGACCCCATGTGCAACAAGAACTTGAGATCTTTAACTTGCATCATCCTGCCTGATTTCTGATCACCTCACTGCCTTCAAATGAACTGATGCAATAAACTGTAGAACTTTTGTGCTGGAGCGTAAATCCCAGGATACCAAGTTATTGATTCGTTTTGATATGTTCTGGTGTTGAGACCATGTGGAGCtcctatatataaatatggctGAGATTGGAAGACATTGACGGCCTTCAGTTAAGGCCCCCTTGAATGGGGGTCAAGTAAGCTATACCCTTTTTTGCCCCTTCTATCCCTTCTGATAAGTTGAAAAAGAGGTTGTGGTCCTCATGCCTTGACCTTAACCTTGGTGTAGGTTCGATGTTAGGCATTACCTACCTATAGATAGTGAGCAGGCCTGAATAGAAGAACCTGCTGGGCCCAAACTCCTAGCCCACCCCCTTCCCCCTTTCCCTTCTTAGGCCTTTTGGCCTTCATTTCTTTACCCCCTGTACACCCGGCCTCCACCATTCGCCCCTCTCTGGCCACAGCCGTCCTCCCTCCCCGTACCCGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142218 lncRNA upstream 72905 20755293 ~ 20755532 (+) True G105235
TU141983 lncRNA upstream 176176 20649096 ~ 20652261 (+) True G105079
TU141972 lncRNA upstream 207996 20618790 ~ 20620441 (+) True G105074
TU141924 lncRNA upstream 403862 20348319 ~ 20424575 (+) True G105041
TU142285 lncRNA downstream 10911 20871791 ~ 20909285 (+) True G105270
TU142293 lncRNA downstream 37321 20898201 ~ 20899309 (+) True G105275
TU142295 lncRNA downstream 128393 20989273 ~ 21055483 (+) False G105276
TU142333 lncRNA downstream 134879 20995759 ~ 20999373 (+) True G105300
TU142336 lncRNA downstream 139259 21000139 ~ 21004638 (+) True G105303
XM_007237402.3 mRNA upstream 1162 20804054 ~ 20827275 (+) True gtf3c3
XM_022674871.1 mRNA upstream 1162 20804054 ~ 20827275 (+) False gtf3c3
XM_022674872.1 mRNA upstream 1162 20804054 ~ 20827275 (+) False gtf3c3
XM_007237403.3 mRNA upstream 27906 20783070 ~ 20800531 (+) True LOC103029333
XM_007237404.3 mRNA upstream 54108 20765742 ~ 20774329 (+) True LOC103029654
XM_022674873.1 mRNA downstream 65 20860945 ~ 20908775 (+) True LOC103031253
XM_022674878.1 mRNA downstream 84065 20944945 ~ 20956371 (+) False mdh1b
XM_022674877.1 mRNA downstream 84066 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA downstream 84157 20945037 ~ 20956958 (+) True mdh1b
XM_022674884.1 mRNA downstream 556556 21417436 ~ 21550327 (+) True nrp2
TU141369 other upstream 1905234 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3701127 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 3934714 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4320660 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 4370228 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 128393 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 158158 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 466312 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1949199 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 3054755 23915635 ~ 23923771 (+) True G106017

Expression Profile