RNA id: TU142293


Basic Information

Item Value
RNA id TU142293
length 1056
lncRNA type intronic
GC content 0.49
exon number 2
gene id G105275
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20898201 ~ 20899309 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctccgcttttagactcttttgcctttttttctgtggtagaaatgcgcaccctctccgcttttagactcttttgcctgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggccccatttttctgcgctagaaatgcgcactctctccgcttttagactcttttgccccgtttctctgcgctagaaatgcgcaccctctccgcttttagactcttttgccccgtttctctgcgttagaaatgcgcaccctctccgcttttagactcttttgccccgtttctctgcgctagaaatgcgcaccctctccgcttttagactcttttgcctgtttttctgcgctagaaatgcgcaccctctccgctttttagacctcttttgccccgtttttctgcgctagaaatgcgcactctctccgcttttagactcttttgccccgtttctctgcgctagaaatgcgcaccctctccgcttttagactcttttgccccgtttctctgcgctagaaatgcgcaccctctccgcttttagactctttggccccatttttctgcgctagaaatgcgcactctctccgcttttagactctttggccccatttttctgcgctagaaatgcgcactctctccgcttttagactcttttgccccgtttctctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgtttctgacacctagcattcaaacttcgaatctcatattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctcgcgggccgctccacaaaagaaaacgggccgcaaatggcccgcgggccgtagtttggacacccctggtctaaagtgattggtcagagctgtgtgGCAcatgagcaagaaagtaaatatagtgagaagattctgtgaaCCAGCGCAAATATATGTGCAGTTTAAAGCTGCTTTGACACTGGGTGTTGAACGCTGtgcttttacagtgtttttaatggggcATGCAGTGCAGGAGTACATGTAGCTGTCATag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142288 lncRNA upstream 37321 20828368 ~ 20860880 (+) True G105271
TU142287 lncRNA upstream 37321 20828437 ~ 20860880 (+) False G105271
TU142218 lncRNA upstream 142669 20755293 ~ 20755532 (+) True G105235
TU141983 lncRNA upstream 245940 20649096 ~ 20652261 (+) True G105079
TU141972 lncRNA upstream 277760 20618790 ~ 20620441 (+) True G105074
TU142295 lncRNA downstream 89964 20989273 ~ 21055483 (+) False G105276
TU142333 lncRNA downstream 96450 20995759 ~ 20999373 (+) True G105300
TU142336 lncRNA downstream 100830 21000139 ~ 21004638 (+) True G105303
TU142341 lncRNA downstream 104436 21003745 ~ 21005854 (+) True G105305
TU142347 lncRNA downstream 113874 21013183 ~ 21015484 (+) True G105311
XM_007237402.3 mRNA upstream 70926 20804054 ~ 20827275 (+) True gtf3c3
XM_022674871.1 mRNA upstream 70926 20804054 ~ 20827275 (+) False gtf3c3
XM_022674872.1 mRNA upstream 70926 20804054 ~ 20827275 (+) False gtf3c3
XM_007237403.3 mRNA upstream 97670 20783070 ~ 20800531 (+) True LOC103029333
XM_007237404.3 mRNA upstream 123872 20765742 ~ 20774329 (+) True LOC103029654
XM_022674878.1 mRNA downstream 45636 20944945 ~ 20956371 (+) False mdh1b
XM_022674877.1 mRNA downstream 45637 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA downstream 45728 20945037 ~ 20956958 (+) True mdh1b
XM_022674884.1 mRNA downstream 518127 21417436 ~ 21550327 (+) True nrp2
XM_022674883.1 mRNA downstream 518128 21417437 ~ 21561654 (+) False nrp2
TU141369 other upstream 1974998 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3770891 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 4004478 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4390424 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 4439992 16451175 ~ 16458209 (+) True G104000
TU142294 other downstream 89964 20989273 ~ 20992812 (+) True G105276
TU142348 other downstream 119729 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 427883 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1910770 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 3016326 23915635 ~ 23923771 (+) True G106017

Expression Profile