RNA id: TU142294


Basic Information

Item Value
RNA id TU142294
length 3178
RNA type TUCP
GC content 0.41
exon number 2
gene id G105276
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 20989273 ~ 21055483 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTTGTCTCTTCAAATATTCttccaaaacaacaactttcCACTTCAGAACAAAAAGAGCAAATTCAACAATCAAAAAAGGTGGTTAGATAACTCACTCCTGTAAATCAGAACCTGCAACAACGCTTTCTTTAAGcaaacaaacaccaaacaacTCACACACCACCTGCTCCTACCTTTAACCCTCTGCAGTTAGCTTGTATTGAACTGATGGGCCTGACAGCTAGCTAGCCGGATAACTTTAGCCAAAGGTCAAGGCAGTCTAAGAAGGTCAGGAATTATCAGATGGTCACTTTTCTCTTGAAGTTAAGCTTGcataattacctttgtttaacTCTATGTAACATGGGTTACCACTGGAAcaatgaggctaatgtagctaacagcaATGGAATCTTAGAGCTACCAAATTAGCACCGTGCCTAAACCAGTACACACATAGGTCACTAGATAGGTCTTTCACAGAGTCTACAAAATATTActgaaaatatatgtattacaaAATTCTTGAAGCATCTTCAATTActtgttagccacattagctAGGAACAGAGAAACATTTAGACAGAAACAAGTCTTGACTGTGtgcaagtaaaaataaaaatcctgcaagttttaaaaaatatatttagctcTCTGGAAAGCCCTTCTTTAGTCAAAAACACCCCTAACATCACCATCAACTTAGCAGTAGCCTAGTCTACTTATAAATAGCATGGTAACTTGTAATGCCAACACCACTGACCAGTTTtttgccaaaaaacaaaacaaaaacaatatttcacTTGGATCACATTTGCACTTTGTTGTCAAATGTATCTCAAGTTAATCAGACTGAAATCAGGTCAGCCTTTTTCTGTGTCGTGCTGAACGAGGCTGCAGTCTTAAGATTCACAACTTTAAGTAAAAGAAGCATTTTGTCCGCAACCATATAGACCCTCTATAATCGTCTTCCTCACCCACAAGAATCACATGCCCAATAACAAGTTTACTCTGTCAAATGCCTCTTCGGCCCCATCCACACACATCCAGAtcaattttatatgaatttaaaggaaaatatttCCATCCACACTGAGATGAAAATGCTTGCACAAGCATGTGAGATCTGTATTAACTctcaaagaaaaagtaaaagaacatAGAGGTTTAAATTACACACTACTACTCCCTAAGTAGTGTACTGTGCAGGTCACAAAATTACAGATTCTAACTTGAACAGagcattatatatttgtaataaaagtgtatttacatttatttatgttaaaatcTGAAATCTAGTGATATCTGCATGCAGACACTGTAGTTTTATGCTGTTCACTAAATAAGAAGTAAGAACTCTTTGAGGACTTTTAGACAGTGGCATTTTTTGTGCGAAGCTGAACTGGCCGTGACTGTGGAATAACTTTCAAAGACTTTCTAATGAGGTGAACTATACTTAATGACTTATTTCAGTTTTGAAAATGAGTTGTAAAGGACCATACaatgatctttaaaaaaaaaaaaaaacattcaagctTAATCCTCATCttattctttatcttttttttattttgcgcACCTTAATATTTGTATCATTAGCCTATTGCAGTGGTTCTTGTGAACATCCGTTCTGCATATACTGGTGTTTTTACTGCTTATAGCACACCCACGGGGCATTTTACAAAGCATTTCACAGCTTAACCAGATAACTACCTTGTCTGAAAGAAAAATAGTTGGCTATCTGAGGgcttttcacacctgtagtttgtttctttgttaagGAATTTGATTCTCTGTTAATGAATTCGATTCTCTGTGGATGAGTTAGTTtgtacttggagcgttttctccaaCCAACCATATTATTCTccctcggtttggtttgttttcgcACAGGCACCTAAATCATGAAAGCatgttgtctcctctgattggtcagtgcTGTCTGGCGCGGGAGCATAAATACAGCAAGAAGGTCCtgtgtaaattaaaataacatatcGGACAgttgggtcagatcgagaccggAAACCACAAACAAACCGCTTTGGAGTTAGTCTGGGACCAGACCAAGAACACCTCCTTTAGCGGGTCTTGTTATAGTTGTTTTAGTCCACACCCAGGTGTGATTACTGATTTCACATCTGCTGAAACGAAACGCACCATAAGTGTAAATAAATCATAGTctgttttaactggaccaaatagtgctagTATGAAAATGCCCTGAGAAATCCTGCTTTGTAAAACACTTCATTCCAACTTGACTACATAGCCAACTAGAATGTGTGGGTTGAAATTATTATCTTGGAAGAATTAAAAACAGGAAATCACAATATATGCAGAAGGGAGAATGCCCCAAGAACCAGCGTTAAGAACATCTTACTGCCATGTCACTACTCTCTACTGCCATTGAGATCTAAGTGCTTTTAGAACCATTAGAAGGTTTTTACATTAAGAATTTTTTTCGATTGAGCAAGTCTAAAAGACGAGCAGGCTGTATTCCACAAGAACTGTCCGTGACCTAATCCGTGGGTTTGGCTGTGATTCTCTAACCAGGTACGAGGAGAGCTGGGGCTTTTCCAAAAGGCAGTGCAGTTTCAGGGCAACAAGAACGTCTCTGAAGGGTGGCCACAGTGATTAAAGGACCTTCACTGACCATAGCATTAGAAAGCCAAGGTGTGGCAAGCCAGGTGTACCAGGATGATTGATGGTCTGTGGAGACGTTACGAGACACACACTGCAAAGGAGAAAAAATGTCCAATCGGCCACAGCAGAAGAACGGTGGGTCGGTGCAGCCCTGCAGTTGGACCTGTGGTGAGGGGTTGGAAGAGCCTAGAGCCGAGAAGAGAGTGccaaaaacagagaaagctgAGTCCTGATAGTAAGGAGAGTGTGAAGACGGGCTGTGATGCTGGTGGTGCAAATCAGGTGCAATGGGAACACGGGGTTTTTGGCTTTCATTGCCCAAGACACAGCAGCGAGGAGGAGAAGCTGCAGCAGGGGTGTGAGACTGGATGCTGGAGATGTGTCCAGAGGGCTGGACAAGGGCTGGGTCCATTACGTCGACTTGGCCAAGAGGAGCGCGAGTAGCATTTGGCTGGCTAAGCTGGTGCACAACAGCTGAGCCTGCGATGAGTCCAGCCACACTGGTCAAGTAAAGCAAACCCAGCATGCATGAGACCTGCAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142285 lncRNA upstream 79988 20871791 ~ 20909285 (+) True G105270
TU142293 lncRNA upstream 89964 20898201 ~ 20899309 (+) True G105275
TU142288 lncRNA upstream 128393 20828368 ~ 20860880 (+) True G105271
TU142287 lncRNA upstream 128393 20828437 ~ 20860880 (+) False G105271
TU142218 lncRNA upstream 233741 20755293 ~ 20755532 (+) True G105235
TU142333 lncRNA downstream 2947 20995759 ~ 20999373 (+) True G105300
TU142336 lncRNA downstream 7327 21000139 ~ 21004638 (+) True G105303
TU142341 lncRNA downstream 10933 21003745 ~ 21005854 (+) True G105305
TU142347 lncRNA downstream 20371 21013183 ~ 21015484 (+) True G105311
TU142425 lncRNA downstream 217921 21210733 ~ 21210986 (+) True G105363
XM_022674877.1 mRNA upstream 32240 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA upstream 32315 20945037 ~ 20956958 (+) True mdh1b
XM_022674878.1 mRNA upstream 32902 20944945 ~ 20956371 (+) False mdh1b
XM_022674873.1 mRNA upstream 80498 20860945 ~ 20908775 (+) True LOC103031253
XM_007237402.3 mRNA upstream 161998 20804054 ~ 20827275 (+) True gtf3c3
XM_022674884.1 mRNA downstream 424624 21417436 ~ 21550327 (+) True nrp2
XM_022674883.1 mRNA downstream 424625 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA downstream 424626 21417438 ~ 21561654 (+) False nrp2
XM_015602212.2 mRNA downstream 618760 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA downstream 618760 21611572 ~ 21616436 (+) False LOC103037976
TU141369 other upstream 2066070 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3861963 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 4095550 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4481496 16502176 ~ 16507777 (+) False col17a1
TU140510 other upstream 4531064 16451175 ~ 16458209 (+) True G104000
TU142348 other downstream 26226 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 334380 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1817267 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2922823 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2994395 23987207 ~ 23989592 (+) True G106036

Expression Profile