RNA id: TU142341


Basic Information

Item Value
RNA id TU142341
length 989
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G105305
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21003745 ~ 21005854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgcccttaagagtagtggaaaaaactaatttccttcacctgatggtgtacagcttattttttttaaggagacattaaattataattgttccaggtttctacaataaatagttaattgaacaaaaaacctttgttgtcatttctttaagggtcagtttaataatatatgtaacaaactgtgataccgtgataaccgtgataccgcggtattttctgagacggttatcataccgtgaaaatctcataccgttgcaaccctagtgtCTACAGTGCTCATACTTGTACAGTGGCGTGATAAAGTTTTTGCCTTCatacagatttctttagtttttacatttttgtcatacattttttggattattaaaccaaatttaatatcagaaaaatataaaaagttaatttattaagggaaaaaaaaactatccaaaccaaccaagttattaggttaagtggcaaacactttttccacacagggctagatttgTTTGGATAGTTATttgtcctttaataaataaatgtatcatttaaaaagttgtttttttatatatactccagttatcttataatataataataatatataatataatataatgataatatacaTTTTGATAATATGATTTGTCTTttgtatctctttctttctaataAATCTGTTAGATTTGTTTCTAGGTGTCTGCATATTCACTACAGTTGGTGTTGCACTACATGTGCTGCTTCTATGACTGTGTAGCGCTTGTGTGTTTGTGCCTCCGAATTGAAACTGGATTGTGGTGATGGACGGGACACCATGAGCAGTGGGTTCTGCTGGTGTAGGATCTCATCGCTGACCGAGATTCCATCCATGTACTGCTTGAGAAGAGCCCTCAACTGCTGATTCTGCCGACCTAGAACTGCCTTCTCCCGCTTCAGGCACAGGTGTTCCAGTAGAACCTTGTTGTAACGCTGCCAGaatttttccagtgcagtgttGTCCAGCATTGCCTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142333 lncRNA upstream 4372 20995759 ~ 20999373 (+) True G105300
TU142285 lncRNA upstream 94460 20871791 ~ 20909285 (+) True G105270
TU142293 lncRNA upstream 104436 20898201 ~ 20899309 (+) True G105275
TU142288 lncRNA upstream 142865 20828368 ~ 20860880 (+) True G105271
TU142347 lncRNA downstream 7329 21013183 ~ 21015484 (+) True G105311
TU142425 lncRNA downstream 204879 21210733 ~ 21210986 (+) True G105363
TU142419 lncRNA downstream 327729 21333583 ~ 21369204 (+) False G105357
TU142483 lncRNA downstream 585988 21591842 ~ 21592052 (+) True G105409
TU142540 lncRNA downstream 661998 21667852 ~ 21668149 (+) True G105456
XM_022674877.1 mRNA upstream 46712 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA upstream 46787 20945037 ~ 20956958 (+) True mdh1b
XM_022674878.1 mRNA upstream 47374 20944945 ~ 20956371 (+) False mdh1b
XM_022674873.1 mRNA upstream 94970 20860945 ~ 20908775 (+) True LOC103031253
XM_022674871.1 mRNA upstream 176470 20804054 ~ 20827275 (+) False gtf3c3
XM_022674884.1 mRNA downstream 411582 21417436 ~ 21550327 (+) True nrp2
XM_022674883.1 mRNA downstream 411583 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA downstream 411584 21417438 ~ 21561654 (+) False nrp2
XM_015602212.2 mRNA downstream 605718 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA downstream 605718 21611572 ~ 21616436 (+) False LOC103037976
TU142294 other upstream 10933 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 2080542 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3876435 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 4110022 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4495968 16502176 ~ 16507777 (+) False col17a1
TU142348 other downstream 13184 21019038 ~ 21028990 (+) True G105312
TU142415 other downstream 321338 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1804225 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2909781 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2981353 23987207 ~ 23989592 (+) True G106036

Expression Profile