RNA id: TU142348


Basic Information

Item Value
RNA id TU142348
length 1205
RNA type TUCP
GC content 0.49
exon number 11
gene id G105312
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21019038 ~ 21028990 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGTATATGTTcaaattcttttttctttttaaaattagtgGGTTCATCTTACATTCAGGTGTGCTCAATAGCCTGGATATTATAGTACACACAGCCTATTTGGAAAGACAATGGAGGAAGTTCCTGTTTTACCTCATCCAGTAGGATAATCTGGGGGGCTTTAAGGATTGTGCGAGCAATGGCCACCCTCTGCTTCTCTCCTCCGCTCAGTTTTAGACCCCTCTCGCCAACTTGAGTGGtgtatcCTTCAGGGAAGGACAGAATCCTCTCATGAATGTCAGCGGCCATGGCTGCCTCCTCCACTTCCTCGTCGGTGGCAGAGACTCTGCCGTAGCGGACGTTTTCACGGATGTTGTCGTTGAACAGGACAGTGTCCTGAGGGACGACCCCAATGTGTGCCCTCAAGGAGTCCTGCTTGACCTTGGCAATGTCTTGTCCATCAATGCGGATGCAACCACCCTGAACATCATAGAACCGGAAGAGCAGTCGAATGATGGTGCTCTTCCCAGAGCCTGACTGGCCAACAAGTGCAACAGTCTGGCCTGGCAGGACGGTGAAAGAGACGTCCTTCAGAATCTCCTTCCCTTCAGTGTAGCTGAAGAAGACATTCTCGAACTCAATCCTCCCTTGCCTGTAGTTCAGGTTTCCCGCGTTCACGTCATCTTTTACCTCCTGTTCCTCTGTGAAGAGCTGGAACATGTTCTCCATGTCAATGAAAGACCTCTGGATCACCCTGTAGTACGTTCCAAACCAGTTGAGTGGTGTGTAAAGCTGGAGGATGTACGTTCCGAACAGAACATAATCTCCCACCTCGAATTTGCCCTCTGTGACAAAGTAAGCACAAAGCAGTGAGCCGGCCAGCAGACCCGAGCCGATGATCAGATTCTGCGTCTGGTTTAACAAAGCCAGCGAGGCGTTGGTCTTCCACTCCAACAGCTGGTACTTCTGGATTGCTTCCTCAAAGCGTCCTACTTCATAACTCTCTGCGTTGTAGTATTTCACCGTCTCGAAGTTTAGCAGGGAGTCCACTGCTTTGGCCTTGGCGTTGTTATCATGAGTGTTCATGTCTCGCCTGTACTTGGTCCTCCATTCAGTGATTATAATGGTAAGAGTGAGATAAAGGGCCATGCAGACGAAGGTGATGAGACCAAACCAGGCATTGAAGTAGGAGATGAAGTAGATGATGGCTATGACTATGTCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142347 lncRNA upstream 3554 21013183 ~ 21015484 (+) True G105311
TU142341 lncRNA upstream 13184 21003745 ~ 21005854 (+) True G105305
TU142336 lncRNA upstream 14400 21000139 ~ 21004638 (+) True G105303
TU142333 lncRNA upstream 19665 20995759 ~ 20999373 (+) True G105300
TU142285 lncRNA upstream 109753 20871791 ~ 20909285 (+) True G105270
TU142425 lncRNA downstream 181743 21210733 ~ 21210986 (+) True G105363
TU142419 lncRNA downstream 304593 21333583 ~ 21369204 (+) False G105357
TU142483 lncRNA downstream 562852 21591842 ~ 21592052 (+) True G105409
TU142540 lncRNA downstream 638862 21667852 ~ 21668149 (+) True G105456
TU142554 lncRNA downstream 798834 21827824 ~ 21833705 (+) True G105470
XM_022674877.1 mRNA upstream 62005 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA upstream 62080 20945037 ~ 20956958 (+) True mdh1b
XM_022674878.1 mRNA upstream 62667 20944945 ~ 20956371 (+) False mdh1b
XM_022674873.1 mRNA upstream 110263 20860945 ~ 20908775 (+) True LOC103031253
XM_022674871.1 mRNA upstream 191763 20804054 ~ 20827275 (+) False gtf3c3
XM_022674884.1 mRNA downstream 388446 21417436 ~ 21550327 (+) True nrp2
XM_022674883.1 mRNA downstream 388447 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA downstream 388448 21417438 ~ 21561654 (+) False nrp2
XM_015602212.2 mRNA downstream 582582 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA downstream 582582 21611572 ~ 21616436 (+) False LOC103037976
TU142294 other upstream 26226 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 2095835 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 3891728 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 4125315 16888396 ~ 16893723 (+) False LOC103035065
TU140514 other upstream 4511261 16502176 ~ 16507777 (+) False col17a1
TU142415 other downstream 298202 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1781089 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2886645 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2958217 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 3382218 24411208 ~ 24413098 (+) True G106146

Expression Profile