RNA id: TU142425


Basic Information

Item Value
RNA id TU142425
length 254
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G105363
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21210733 ~ 21210986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACCCAACTTGCAACACGTAAGTAAAGTGTGGATAATCTAATGATTCAATCTAGAACAGTCTAGTGCTGTAGATCATTCAAACTCCTGTTTGCACCTCAGACCTTTTATACTTCTGTTAATATCAAAGACATCCCATAGTCCTCTTAGAACCACAGACTTTTCACAGTCCTGTTAGTGGTATAGACCGTCCACAGTCCTATAAGTGCTGTAGACCTTCTGTAGACCTGTTAAAGCCAGAGACCTTCCATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142295 lncRNA upstream 155250 20989273 ~ 21055483 (+) False G105276
TU142347 lncRNA upstream 195249 21013183 ~ 21015484 (+) True G105311
TU142341 lncRNA upstream 204879 21003745 ~ 21005854 (+) True G105305
TU142336 lncRNA upstream 206095 21000139 ~ 21004638 (+) True G105303
TU142333 lncRNA upstream 211360 20995759 ~ 20999373 (+) True G105300
TU142419 lncRNA downstream 122597 21333583 ~ 21369204 (+) False G105357
TU142483 lncRNA downstream 380856 21591842 ~ 21592052 (+) True G105409
TU142540 lncRNA downstream 456866 21667852 ~ 21668149 (+) True G105456
TU142554 lncRNA downstream 616838 21827824 ~ 21833705 (+) True G105470
TU142563 lncRNA downstream 686990 21897976 ~ 21900325 (+) True G105479
XM_022674877.1 mRNA upstream 253700 20944946 ~ 20957033 (+) False mdh1b
XM_007233712.3 mRNA upstream 253775 20945037 ~ 20956958 (+) True mdh1b
XM_022674878.1 mRNA upstream 254362 20944945 ~ 20956371 (+) False mdh1b
XM_022674873.1 mRNA upstream 301958 20860945 ~ 20908775 (+) True LOC103031253
XM_022674871.1 mRNA upstream 383458 20804054 ~ 20827275 (+) False gtf3c3
XM_022674884.1 mRNA downstream 206450 21417436 ~ 21550327 (+) True nrp2
XM_022674883.1 mRNA downstream 206451 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA downstream 206452 21417438 ~ 21561654 (+) False nrp2
XM_015602212.2 mRNA downstream 400586 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA downstream 400586 21611572 ~ 21616436 (+) False LOC103037976
TU142348 other upstream 181743 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 217921 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 2287530 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 4083423 17119847 ~ 17127310 (+) False LOC103031769
TU140710 other upstream 4317010 16888396 ~ 16893723 (+) False LOC103035065
TU142415 other downstream 116206 21327192 ~ 21368253 (+) True G105357
XR_002650601.1 other downstream 1599093 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2704649 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2776221 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 3200222 24411208 ~ 24413098 (+) True G106146

Expression Profile