RNA id: TU142554


Basic Information

Item Value
RNA id TU142554
length 5862
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G105470
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21827824 ~ 21833705 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttgttataaataaaaACGCCAGCTCGTTTATGTATTTGTGTCTTATTATAAGTCTGTATGTCAAGTATATACGGATAGGATATGAGTTTAAAGCCCCAATCAGAAATCCTTATATTAGCAGGTCATATTTAACTACTGCAACAACAGAGTATTTCATTCTATAATGCgtttaccctgtttttaatgttgGTGCTATTCTACAGGCAGCAACAGCACTGCTTACAGCATTTCTGATGGGGGCTTTGATAGAAGAAGAAAGAACAGGTCGTAATATCTggaaaaagtttgaaaaaaaaaaataacatgggAAAAGTACTTTTATAAGGAAGACGGACTAGAAAATGTAAGAAGAAAGgattaaaaagaagaaagcGCTGGTACAGGCAGAGATAAGTAGGAATATTTGACATCAGTTAGCGCAAATAATGGTCAAATGAAACTAAACCTAATGATAAACTAGATACAGCTGTAGTTGGAAGTTTATGGCTTATGCACATTTATCATGATCATGAATGTCATAGCAATATAGTTCTTTTTCTGAGGCAGAATGAGTTATAACATACACAATTAGCTGAAAGAAGCTGAAATCAACAGTGtcaaaataaatatagatatttagatatacaACTcttgaaaaaagagaccacttcagtttctaaatcagtttctttgattttgctgtttataggtatttgtttgagcAAAAcgaacattcttgttttattctaaaaactacggacaacatttctccaaaaagacaaaaaaaaagacgcagagctttaaaaaaaaacaagttcatattcataaagttttaagagttcaaaaatcaatatttggtggaataaccctggttttaaacacaggtttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttataccactcctggtgccagaaaattggtaaaaccaaagaaactcataatttttaagtggtctcttatatttttgtccagagctttatatatataccGGAGCTTTTTATATACCAACCTCAGTGGTTCTGGAAGTTTAACAATGTAATCTAATTTTAAGATCAAGGTCTCTTAATGTCCTGTTAGTGATCCCGATTGGCTACGTATGTCTTttccacacagacacagttcagCTTGGAACACTTATAAACCAGGCTCGGCCTGGTTTTCTCCACATGGTAAGCTAACTTAGAGTTACTCAGTGGGAGAGCATAGAGACTAATGGATAGCAAGAAAGGTCATACTAACTGtgtggtagtgatgtgggaCAAGCCTGCTAATGATGCGATAGCAATGTTGGACGAGGCCGGTATCTAGCAAGAAAAGCTCTCAAATTTGCATAAAAGCCCAGATCAGAGTTGATACATTATGCATACAGtatttggtccggttagttttggttttacactgcagtttattaaGCACATTAAATAACTACTGCATCCTATCATTATCAGTTACATGTgctgtgtctctctctatacttcatattaattGGCTTGTAGAATGTTGTGATGAATTCTAGCTCCCTTTTAAAACCGACTCCCATTCACATGCACATCTCACGGAAAATTGAATGTAAAAGATGATTGTCAAGGGCGGTGGAGTGGTCCAGTgatgatcgggagatcactggtttgaatcccggccatgcagcttgccatcagctcccGCAGCCCTGGGAGAGGACTTGCTCTCTCCAAGTGGGTAGATGGCAATCATCACTTCTAGTGTGATGCCAGTCAGCACAAGGCACCTGTGCTGTACTTTCCTCCAAGTACACTGTGATGCtattcagcaatgctgcatcagcagcagtttgaaaagaggcagagtctgacttcacatgtatcagaggaggcatgtgttagtcttcaccctcctggtgttgtggcatcatcagtgatgggggatatacagctgactagcaattgaataggtgggacaattggcctagctgaATTGTGAGTAAATGGGAATTTTCTCACATTctcagattatttttatttctgttttgataggtgtgaaagcacccttagttAATATGCTTTGTTTAGCAAGTTAGCATCTGATAACAGCCATTGATGAGACACTTTCTTGATGCTTATTTAGCAACACAGAATCTAACTGGTCTAAAGTTTTCCCACTGGTTAAAAAATGGTATAGAATGGCCTTAGTAACCACAATAAGAATGTTCAAGGAGCTCAGAGCAGACCTAAGAAGGATGGATGTAGATTTACCTAAGAGTCATTTCCACAACTATCAGTTCAAAGAATCAAAGAATGATATGATATATCAAAGAATTATATGATGGTACAGTTCAAAAAGGTGTAGCTACTTCCACAATGCCTTGCTTAGCACTTACTAAGAGTCAGTAACTTGATTTAGATGGCGGTGGAGCataggaactgtgttctctggaattatggCGCTTTATCCAATTCTTTTGGGTTGAAGTGGTAGGGTGATCATTTTTAAACACTCTGACCTTGCTAACACTCTTCTCACTGACTGCAATCAaaccctcacagcaatgctccatgATCTAGTAGAACACCTTTCCTAGACTgtagacagttactccaacaaaagcaggacaaacTCTTTTTAGTACTCTTGACTTCAGAGGAgccaatgaatgagcaggtgtctcaatactATTGTTCCCTGCCCAAACAAAATACTATACAAGCTCAATATTGCCATGACACTTACATATGACCATGAGTGCACATAAACTTCCCATCACAACTGTACATGAAACTGAACATTGCAGCACATTTGGTCTATGTTTATGTACTATTCATTTTGCAGTTTTACCATTTAGCTGTGGAGTTCATACAGAGGTAACTTCATTGATCAGAAACATTCAGAAATTTACCAAGCggaagctctttttttttcagacatgtGTGATAAGTAACTGTAAACAGGATACATTGTGTCTTTTTAGCAAGGCTGTCGAAAAAAGACGGCATATCTTCAAATTTAGAGCAAATTTACACTTCAATTTCAAGCTTATATGAAGAAAAAAGGCTAAACGCAAACAATGATTTACCAATTTAGCAAAACTGGCTGTGGAATCTGTTCACTGTGTTATCAGTTACTTctccaaatcagaaaaagttgtGACAGTATGcaaactgcaaaaacaaaaatgcagacAAAATTACCCAATGTATTTCATACTCAATTAATCCCTGCATTTAGGCCTGTGACATGGGCGTGAcatgttttgggcgtaacatgaactGAACCAAGTTATCAGTGTGTCACCTGtatttccctttaagagccagctgCACTCTAACTTTGGCGCattgatattttaacagtgtggcgCTTTTATGTgtttcagcagaggatactgacctccATGTTCACAATGTAAAGGTGAGCCAGCTGgtaatttaagggaacagcaatattatttatttattttttttcacttctgtttattgtggatgtaaaagcTGGATGTATGAAGACTTTTTgaaattcatttaaaagctgtctgaacagtggtaggatggttcccccttatatgtgagtcttgctcctcctaaggtttctttCTCCTCCAGCTTTTTCTTGCCTCTGCGCTCACTGGGGGGTTCTTTATTATATGTTTAgggttttgtctgattctttgCTCTGTAAAGCTGTTGGTTACAACATCAGTTGTAGAAAGCTCTAtataattaaatcaattaaatacatttgatttgatttggatTTGCCAAGAgagcaacacaccagaaattgacCTTAAcgcacctcacttccagactcACTGTAGATTTATtcttaaactctgatgctattttacaGCGTGGGCGCAAGGCGAGAAAAAAggctgttgacagggtgtaagatagcaatgagcatgcACGATAGGGCCCATGGTGCATTACCAATGTATCTATTATTATGAATGTTACTGGAGGCTTCCACTAGAGGACAGTTTAGGCCCCTGCGGGACAAAACCCTTGTCAGCTCTGTGCCTGCTCTGTTCCTATAGCATTTGCAGTCTTGCACGGACGTAGCGGTCACTGATTTGTTTTCATTTCAATTTACACGTTTCCACATTGACCTTTAAAGCGAGGCTGATCTTTCACCAGCTGTTCTAAATTAGCATATTTGTCGATGTGCAGCAGCAAGGACTCATCATGGAGCTGCTCCTCAAAACTGTCTGTAAGTTCTTCGTAAGATGCTGCTGAGGGATGTACCGCCCCCTATGGTTTTAGATGTGCACAAGCAACACAAAACGAATGCAAAATACGTGAGGCACCACTTCGTGAGGTACGTGAACATATAGTTAATAAAAGCAAGTATATCTCTACTCTCAAGTCTATAGTGCCATTTATGAatgtaaatttgtattttagtgCTTGACAAAGGTTTGCCAAACTAATCCCTTGCTCCTGGTCGTGGTTTAATCAGCTACTGCTAAATGACAGTTCTTGGTGCAGTGCATTACAAGGgacattgcacattttttaatgttttaatgtttaagcaTATAACAATCATTAAggcctgttgtccatcagacataagccccacccactgcactggaaaataCAGTACCTCGGACATGAGGCAAAGTAAgagctaatttttactgattttatattttttagaacacttttaataatcgttatttttttgttcaggcATGGGTGGTGAAATAAAGAGGTCgcaaatatagcaaatataaaatacaaatgctAAACAATGCaatgaacattataaagcagttaaatgttttagttaggagtttagattaaaatattactgtCCTGTTTTGTGTACAtcacacaaaaaacagcattcttatattcttattcttatcccatgactggaacataattcaggtctgaaagggttaaattgtTTCTTAAATCCTGATTCCTTAAATTGTTTAATGACATTAAAGCAGCTTTTTGTGGCATGCTGTGGTACCAAACCATGATTGCAATCACCTATTTAAAACTGCATGTCTAATAAGCTCATTATTATCTTAATAAAAGCCTTGTCCCAACTATTTTTGCAACGTGTTGCAGGCctaaaaatgcagaaatgtataatatggatgtatattaacaaattaaatgaagtgAACAATGTGAGAAGtaaatacatatgtatatattttctggcattttccatactgtcccaacgTTTTCTGATGTGGTGTTGTGTTTTACTGTCAAGCATAGTCTGATACAAGCATTTAATCGCTGTCATAACAAAACCTGACAACTCATATCATTActtattcattttctatgtattTTGTGTAGTAATGTCTCATTTGATGTAATCATGGACCAACATGCCATGCTGTACAATCATGAAACGCTGGTGGCCTCAAATGAAAATCCtggtctcaaaaaaaaaaaaaaaaaaaaaactaaacatccGGAGCTGTGGAATTCTGATATGACAGCGATTATACAGAATCATCTCTTCAGCATCTTTTACAAATCTCTATTCTGGGAGACTGCCCTAAGATCCAAAAGGAAGCGAAGAAGAAAAAGGTGTTGTTGTCCTGTTGAAGGTCCTGCTGTGCTACGGCTCTCCTCTAAGTGCAATAGGAGGTTAAGGAGAGTGGTCGCTGAGTGTCTCGTAATGTGCTTATTCACTGCCTCCTAAACATAAAGAGGGCTTCTGTTAGCTACTCGTTTTGCTTTGGTGGAGAAACGAAGATGTAGCCCCCTCCATTATTCCCCCAAGTCTCAGCAGGAAGAGGCACTGATCTTCTCCGACACTTCAGGATCTGACTTAGCGACGAGAAACCGGAGCCGCCCTCCGCCCAACCTGATCAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142540 lncRNA upstream 159675 21667852 ~ 21668149 (+) True G105456
TU142483 lncRNA upstream 235772 21591842 ~ 21592052 (+) True G105409
TU142419 lncRNA upstream 458620 21333583 ~ 21369204 (+) False G105357
TU142425 lncRNA upstream 616838 21210733 ~ 21210986 (+) True G105363
TU142347 lncRNA upstream 812340 21013183 ~ 21015484 (+) True G105311
TU142563 lncRNA downstream 64271 21897976 ~ 21900325 (+) True G105479
TU142569 lncRNA downstream 84283 21917988 ~ 21920210 (+) True G105484
XR_002650552.1 lncRNA downstream 119087 21952792 ~ 21960494 (+) True LOC103035373
TU142578 lncRNA downstream 131039 21964744 ~ 21965537 (+) True G105491
TU142580 lncRNA downstream 131039 21964744 ~ 21965537 (+) False G105491
XM_015602212.2 mRNA upstream 211388 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA upstream 211388 21611572 ~ 21616436 (+) False LOC103037976
XM_022674883.1 mRNA upstream 266170 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA upstream 266170 21417438 ~ 21561654 (+) False nrp2
XM_022674884.1 mRNA upstream 277497 21417436 ~ 21550327 (+) True nrp2
XM_022674390.1 mRNA downstream 92644 21926349 ~ 21934395 (+) True LOC103035679
XM_022674355.1 mRNA downstream 421380 22255085 ~ 22283453 (+) True LOC103046939
XM_022674890.1 mRNA downstream 479521 22313226 ~ 22480428 (+) True LOC103046323
XM_022674356.1 mRNA downstream 675741 22509446 ~ 22517576 (+) True LOC111193458
XM_022674357.1 mRNA downstream 691552 22525257 ~ 22588961 (+) True LOC103045705
TU142415 other upstream 459571 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 798834 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 835012 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 2904621 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 4700514 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 976374 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 2081930 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2153502 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 2577503 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 3528039 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile