RNA id: TU142578


Basic Information

Item Value
RNA id TU142578
length 303
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G105491
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 21964744 ~ 21965537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagagctaactcagctaactgaagaaccacagagctaacctagctaactgaagaaccacagagctaacctagctaactaaagagccacagagctaacccagctaactgaagaaccacagagctctaacccagctaactgaagaaccacagagctaacccagctaactgaagaaccacagagctaacccagctaactgaagaaccacagaactaacccagctaactgaagaaccacagagctaacccagctaactgaagaaccacagagctaacccagctaactgaagaaccacaaagctaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650552.1 lncRNA upstream 4250 21952792 ~ 21960494 (+) True LOC103035373
TU142569 lncRNA upstream 44534 21917988 ~ 21920210 (+) True G105484
TU142563 lncRNA upstream 64419 21897976 ~ 21900325 (+) True G105479
TU142554 lncRNA upstream 131039 21827824 ~ 21833705 (+) True G105470
TU142540 lncRNA upstream 296595 21667852 ~ 21668149 (+) True G105456
TU142590 lncRNA downstream 24893 21990430 ~ 21992563 (+) True G105501
TU142648 lncRNA downstream 265470 22231007 ~ 22231320 (+) True G105542
TU142653 lncRNA downstream 287839 22253376 ~ 22253613 (+) True G105547
TU142655 lncRNA downstream 290735 22256272 ~ 22256577 (+) False LOC103046939
TU142689 lncRNA downstream 443889 22409426 ~ 22466799 (+) True G105580
XM_022674390.1 mRNA upstream 30349 21926349 ~ 21934395 (+) True LOC103035679
XM_015602212.2 mRNA upstream 348308 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA upstream 348308 21611572 ~ 21616436 (+) False LOC103037976
XM_022674883.1 mRNA upstream 403090 21417437 ~ 21561654 (+) False nrp2
XM_022674355.1 mRNA downstream 289548 22255085 ~ 22283453 (+) True LOC103046939
XM_022674890.1 mRNA downstream 347689 22313226 ~ 22480428 (+) True LOC103046323
XM_022674356.1 mRNA downstream 543909 22509446 ~ 22517576 (+) True LOC111193458
XM_022674357.1 mRNA downstream 559720 22525257 ~ 22588961 (+) True LOC103045705
XM_007260273.3 mRNA downstream 627101 22592638 ~ 22599854 (+) True alkbh5
TU142415 other upstream 596491 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 935754 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 971932 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3041541 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 4837434 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 844542 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1950098 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 2021670 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 2445671 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 3396207 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile