RNA id: XM_022674355.1


Basic Information

Item Value
RNA id XM_022674355.1
length 1940
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC103046939
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22255085 ~ 22283453 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAACTGCGTGGTGCcgcgcgctgccgctgttgaGCCGAAATCTGACCCCCGTGACCTACACCTTTTCTCTTATGGATCTGCTGATGTCGTCCTGGGAACGTGTACGGAATTCTGGGACGGAGAGGATCTTCAGCTTCTGACTGATTCTGACAGGAAGAAGGTGGTGGATTTTTACCAGCGCTCCTGCATGGCGGGTCAGTGTGTAGCCGTGTCGTTTAAGCCCCTGCTCCAACCTTACGAGCCTGAGATAGATGGAATGTGTGTGGAACTGCCCCTCAGTCACAGTGATGAAACATCAGgGGACATTTCTTTATCTCCCCTCAGGCAGCAGGTATTTCTAGGACTGGTCTCTTCTCAGTATCAGGCACGACCCGTTATGATCAGGCTTATCTCTGGACTGGACAGCGCATGCATTCGCTTCGTTTATTTCTCCAACGAGGAGGAGGTTCGGAGCAAAGTGTTTGCTGAAAAGATGGGTCTTGAAACAGGATGGAATTGCCACATCTCCCTGCAGTCGGAATGCTTCCCTCTTGATCCAGAAAACATTGAAATGCCAGAAAGGGCTGAAGAAGACTCATGTCTGCTTGGAGATCGGGGCAGCGATGAGGTGGAATCAAGAGCTATGGAGCATGACGGAGCATGTCTGATAGAGGATTTAAACAGGGCCAAGCTTCCTAAAGGCATTGAGAACGTCCGGCCTCACCTGGAGAACATTGATAACGTTCCATTATTGGTGCCTCTCTTCACAGACTGCACGTCTCAGActGAGTGTGAGATGGTATGTATTATGCAGGAGTATGGAGAAGTGGTGTGCTGTCTGGGCAGCAGTCAGAACATCAACAACAATGGCATCTTTCTGCAGAGTGACATCAGTATTGCTTTAGAGCCGCTGGCTCCTACCTGTGGTCAGTCCTGTTCAGATGTGCCTCAGAGGCTTCCAGAGTCCAGAGATTCTGTGAGCCTGACCCAGATCTCCAGTGCCATCTGCGGGCTGGCCTGCACAGTGCAGCTCCACCACCAGGACAACAGCAAAGTCATCGAACTCATCAAGCAGGCACGACACATTACAGCTGGCATCCGAAAATGCTTTCTGTTTCTGCTACAGTGTCAGCTCTCACTTGTTCTGATCCAGATTCTGGCGTGTGTATGCCAGCTGCCTCCTCCTCTGGCTACGAGTGATGTCCTATTTCTCTCATGCTTTTATTTCCCTATGCTcagTGTGTCGTTGCTGGGAAAGCCATCTGACAGTTCTATCATGAAGGTTCCAACTGGGAAAAATCTGAGATTCCTAcctaaaaagACGCTGCGCTTCTTCATGCTCTGTTTCCTGGTGAAGTTTGGTTTGACCGTCTGCATCTACTTAACGTGCTTCGGCCTCGTACTGCACGGCTTCTGCCTGGAAATTAATCATGAAGATGAGAAGCTTTGCTACCCAACAGCACTGCTCACGAATTCAACTGTGTGGTCTCCAGACTGGTACGGTAAACATTCAGACGGTCTTTCTCTCGCGCAGAAAGTCATCGCATTCCTCGTGCTGCTCTACGCTAtgtgcaCATCTGTCAGTCATGTCCATCGCTCAGCCCCCATGTGGAAGCAAAGCCCACTGAGTAATCACAGCTGGTGTGCGGTCGTCTGCACTGTGCCGATACTTAATGTTTCCATGGCGATAGGATCTCAGCTACTATTGAATTCCCCGACATCCCCCCACCATTTCTACATCAGCGACATACCTGTGGCCACATGGCTGCTGGGTATATTCTGGCTAATCCCTCTTGTGTTCATCAACGAGGGGATAAAGCTCCACGAGATCAGgATGAGAGTAAGATACCAGAAGAGACAGAAGCTGCAGTTTGATACAAAACTTGGAATGAATTCCCCTTTCTGATCTACAGCCAGACCTACAGTATCCTCTCTATTtgacaacaatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142653 lncRNA upstream 1472 22253376 ~ 22253613 (+) True G105547
TU142648 lncRNA upstream 23765 22231007 ~ 22231320 (+) True G105542
TU142590 lncRNA upstream 262522 21990430 ~ 21992563 (+) True G105501
TU142578 lncRNA upstream 289548 21964744 ~ 21965537 (+) True G105491
TU142580 lncRNA upstream 289548 21964744 ~ 21965537 (+) False G105491
TU142689 lncRNA downstream 125973 22409426 ~ 22466799 (+) True G105580
TU142690 lncRNA downstream 204785 22488238 ~ 22490742 (+) False G105581
TU142692 lncRNA downstream 204785 22488238 ~ 22490742 (+) False G105581
TU142693 lncRNA downstream 204785 22488238 ~ 22490742 (+) True G105581
TU142733 lncRNA downstream 257720 22541173 ~ 22542665 (+) False LOC103045705
XM_022674390.1 mRNA upstream 320690 21926349 ~ 21934395 (+) True LOC103035679
XM_015602212.2 mRNA upstream 638649 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA upstream 638649 21611572 ~ 21616436 (+) False LOC103037976
XM_022674883.1 mRNA upstream 693431 21417437 ~ 21561654 (+) False nrp2
XM_022674882.1 mRNA upstream 693431 21417438 ~ 21561654 (+) False nrp2
XM_022674890.1 mRNA downstream 29773 22313226 ~ 22480428 (+) True LOC103046323
XM_022674356.1 mRNA downstream 225993 22509446 ~ 22517576 (+) True LOC111193458
XM_022674357.1 mRNA downstream 241804 22525257 ~ 22588961 (+) True LOC103045705
XM_007260273.3 mRNA downstream 309185 22592638 ~ 22599854 (+) True alkbh5
XM_022674892.1 mRNA downstream 317757 22601210 ~ 22616958 (+) False LOC103042026
TU142415 other upstream 886832 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1226095 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1262273 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3331882 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 5127775 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 526626 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1632182 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1703754 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 2127755 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 3078291 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile