RNA id: TU142689


Basic Information

Item Value
RNA id TU142689
length 416
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G105580
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22409426 ~ 22466799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccgttggacagataaaaaacagtgatcacactcccgccgacactcaaaacttgagagccctgtctatatttctataaatccgttttcagtttctcctccgtggttgaaaggcagctgtctctcacacagcagaactgagggcggggctgcgctcatgcagaggctctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagatcgtgacctcatttcgattcgatttcgataaaatatcgagatcgtgacacccctactgctcacgcaaccctaaagtgtaaatgagtgtgtaCTTATTTTCTTAAACAGTATTGTTCAATTTTCTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142655 lncRNA upstream 152849 22256272 ~ 22256577 (+) False LOC103046939
TU142653 lncRNA upstream 155813 22253376 ~ 22253613 (+) True G105547
TU142648 lncRNA upstream 178106 22231007 ~ 22231320 (+) True G105542
TU142590 lncRNA upstream 416863 21990430 ~ 21992563 (+) True G105501
TU142580 lncRNA upstream 443889 21964744 ~ 21965537 (+) False G105491
TU142690 lncRNA downstream 21439 22488238 ~ 22490742 (+) False G105581
TU142692 lncRNA downstream 21439 22488238 ~ 22490742 (+) False G105581
TU142693 lncRNA downstream 21439 22488238 ~ 22490742 (+) True G105581
TU142733 lncRNA downstream 74374 22541173 ~ 22542665 (+) False LOC103045705
TU142768 lncRNA downstream 224852 22691651 ~ 22692463 (+) True G105645
XM_022674355.1 mRNA upstream 125973 22255085 ~ 22283453 (+) True LOC103046939
XM_022674390.1 mRNA upstream 475031 21926349 ~ 21934395 (+) True LOC103035679
XM_015602212.2 mRNA upstream 792990 21611572 ~ 21616436 (+) True LOC103037976
XM_007236398.3 mRNA upstream 792990 21611572 ~ 21616436 (+) False LOC103037976
XM_022674883.1 mRNA upstream 847772 21417437 ~ 21561654 (+) False nrp2
XM_022674356.1 mRNA downstream 42647 22509446 ~ 22517576 (+) True LOC111193458
XM_022674357.1 mRNA downstream 58458 22525257 ~ 22588961 (+) True LOC103045705
XM_007260273.3 mRNA downstream 125839 22592638 ~ 22599854 (+) True alkbh5
XM_022674892.1 mRNA downstream 134411 22601210 ~ 22616958 (+) False LOC103042026
XM_007260274.2 mRNA downstream 134412 22601211 ~ 22616958 (+) True LOC103042026
TU142415 other upstream 1041173 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1380436 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1416614 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 3486223 18919060 ~ 18923203 (+) True G104656
TU140760 other upstream 5282116 17119847 ~ 17127310 (+) False LOC103031769
XR_002650601.1 other downstream 343280 22810079 ~ 22820096 (+) False LOC103038624
TU143216 other downstream 1448836 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1520408 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1944409 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2894945 25361744 ~ 25369439 (+) True LOC111193563

Expression Profile