RNA id: TU142896


Basic Information

Item Value
RNA id TU142896
length 2853
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G105760
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 22925117 ~ 22928356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTGATATTGTGCATATCGCTGGAACGACCATTATATTTgaaaaaacaactgaaaaaaagaaaaaaaaaatattatattagtgAAGTATGGGCGTGTGGTTTAATTCTGCAGGAAGTGATGTGTTTGTGCATCAGAGGCAAACAGGAAGTTCTTATATTTCGGTGGTCCTGCAGTGCAATATGTGACATCATTAGTTTGGGCTCTTAGATTACAGCATCTTTCAATAGTCCCTTCGAAGAACAGCGTGACCACACAGCATATagttttccactgttttccatTTCCAGAGCTTTTCTTCCCACTTCAGTGTGAGAGTTTCCTCCCTTTCTATATTCTCGTACCGCAACCGTACAATACCGTACACATGCTTGGCATACCACTTGTTCAAATATTTGGCAGTgtataaaactgtgtaaaaatgaCCTGTCTAGACAACTATAGAAATAAGCTCACTCTAATAAAATTTAGAAGTCGTGTGTGGTTGTAGTGCGCCCAACACTGGTGGCTCAGAGAAGAACAGTGTCTCCCTGCTTACGTTTGGCATGCAGGTAAGGAGGGGggtggagaaggaggaggagaacgaTAAAATCTTGACCTTTAAATGTGTGACGCTAAACTAATGTGGTGTCTGGCCCCAATTACACCAAGTGTCCCTCCTGTTCTACGCCCCAAAAATAAATAGACAGTAGTTCAGTCATTATTAGGTAGTACGTGTTGTCGAGTTTCAGTTTGACCTAACCCTAACAACAATTTCCACTATTCTGAAACCTGAAACTGACTTCTTTTCATGATTTGTGTGGTTCTCCCTTCTGTTGGGTTGATACTTGCCAAGATTTTATCATATCATCTTATcgatttttatctttatctttgttaGTCAAATACTTTGTGGTTGTGCACATCAGAGACACATTTataacttttgtttttgttgttttcatatttgtgttattagatatgtttattaatataattatttggaCTTTCCTTGTTTCATTTGGACCTTCCCACAGGTGTCCGTCTTAGAGTTCAGAGTTTCAGTGTCACTCAGTCTTTCTCGTTTCTTCAGACATCAGACTCAATGCTGGGCATCCTCTTGTAGACGCGCCGGGCTCCACCGGCGCTCATTGCTCTGGGGGCAGGGTATGTGCCGATGGGGGGAGGGGCTACATAAGGCATGACATGCTCGGGGTAAAAGAGGTCAGGGGTTGCCACCCCCATGCCGAGCCCCTTGCCATCGGTCACCTGACCTAATGTGAGCGGCACCAGTTGTTTGTAAATGTCCGTGGCGCTGTGGCCGTGCGCCAGGCGTTGGTCGTCGCGGAGCGTCTGCAAGAAAGGGTTGTCCGTCGGACGGGCCGGGTACATCGACTTGCTACGCCGGCCAATGCCGAGCCCACTCACCCCCACTCCAGCGAGGGTGTGGTTAAGGTGTGTGGGCTGGCTCTTTGGGGCCTTGTCCGGGATCAGGGTGGAAGTGGGCATGTTGGCGTAAGGAGCACTGTCCTGAAGGCTGACCCGACGGGATGAGTTCTTCTGGGGTAGATTCTCGTAGGAATGCTGCCGACGGATGATAACATCTTCGTTCTGATAGTGGCTGATAAGCCCTTCGCCCTCTTGGTCGCTCTGGGGAAGATAAGCAGTGAAGGAAGCATCAGGCTGTGGCAGAAAAGCGGAGAAGTTCCTATCTACACTTCCGCCACGAATGATACCGAGACCCACATCAGGGTGGAGGAACTGGTCCTCGCTGATGTCATACAGGTTGCCAGAGTGCAGACAGGCATCGCAGCGGTACTGAGGGGACCGCACAGTGTAAAGCCCAGAGTAGCTGGTCACTTTTGACAGGCAGCTACGGCAGTGGGTCTGCCGATGGTCTTGGACTGAACCAGGAGCGGCGGAGGTGACGCTGGCCACGCCAGGCTTGCCGTATGTGTTGTACTTCTTCTCCTTCGTAGCAGCAGTGGCAGTCTGCATGACATCCGGCTCATGAACCTGAGTGAGCAGGTTGCTATTCAGCTGCAGGATTGGCTGTTGTTCAGACGAGGAGGGAGGTCGATGCTTGTTGTCCCTGTGCTCGCTGAATATGTCGGGGTAGTGCATTCCATGATCTTGGTCGATGGAGTCGATGGTGTAGATCTGACTGCCCTGACTGCTCTGAGAGTAGATCTGCCCGCTGTGGTTGCTCTGTTGGCTGGCTTGGCTGCGCAGTGTCGAAAGTTCCACATCACTCAAGTCCCGCGGCAGTCGGTTACGCTTCCGTAGCGTCTCTTTGACCTTGTGCTGCTTCTGCAGATCCACACGGCCAGAACAATCAGATATGTCAGATCGTGCTTGAGGATCTTCGGGCAAGTATCTCTGGCTCTTCATCGTGGCACGAGGCTCGATAGGTGGAGCAGCGGGGGGCGGGGAATCACTCTGAGGTCCTGGGGCCTGCCGTAGTGTTTCAACTGACTTCTTCCAGAGTGCACGGGACTTGGACGCAGGTGGTCGCCCTGGTTCATTAGCAAGTACTGGGTTATTGTCAGGAGGCTGGGCATCTGCAAGACTGAGAGCACGCTGTCCAGGCAAAAGGGCATTGTTGAGAGGCTCTTTGTGGCGGTTGGAAAGCATGGTGCTGGCATTGCTGTAGACAGTGTCTTTTGGACAAGGTTGTTGCCTTTGTTCATAAGTTCCAGGATCCCTGGGGTATGAGGGAGGAGACTAGCGACAGGTCGTTTAGGTGAGGTTACCCCTAAGGTGGTAATCTCTTTGGCAGATTTCAGCAGGTGCAGCATGTTGGCCTGAGGACTGAAATCCAACTCTGGAGGCTTCTTCATCTCAATGTGTACACCATGAATACAGCTCCAGATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142793 lncRNA upstream 133936 22779270 ~ 22791181 (+) True G105668
TU142777 lncRNA upstream 218312 22706500 ~ 22706805 (+) True G105654
TU142768 lncRNA upstream 232654 22691651 ~ 22692463 (+) True G105645
TU142733 lncRNA upstream 382452 22541173 ~ 22542665 (+) False LOC103045705
TU142692 lncRNA upstream 434375 22488238 ~ 22490742 (+) False G105581
TU142931 lncRNA downstream 199599 23127955 ~ 23128154 (+) True G105793
TU142934 lncRNA downstream 213038 23141394 ~ 23141901 (+) True G105796
TU142939 lncRNA downstream 224222 23152578 ~ 23152812 (+) True G105801
TU142940 lncRNA downstream 226079 23154435 ~ 23154788 (+) True G105802
TU142941 lncRNA downstream 250281 23178637 ~ 23235052 (+) True G105803
XM_007260264.3 mRNA upstream 105021 22810079 ~ 22820096 (+) True LOC103038624
XM_022674898.1 mRNA upstream 150910 22762438 ~ 22774207 (+) True LOC103039247
XM_022674896.1 mRNA upstream 236029 22671713 ~ 22689088 (+) False LOC103041008
XM_022674897.1 mRNA upstream 236029 22672164 ~ 22689088 (+) True LOC103041008
XM_022674893.1 mRNA upstream 293403 22619030 ~ 22631714 (+) True LOC103042343
XM_007260284.3 mRNA downstream 354375 23282731 ~ 23286928 (+) True LOC103045101
XM_022674906.1 mRNA downstream 363837 23292193 ~ 23305156 (+) True LOC103044794
XM_022674909.1 mRNA downstream 385276 23313632 ~ 23373618 (+) False prkcb
XM_022674908.1 mRNA downstream 385278 23313634 ~ 23390445 (+) False prkcb
XM_022674907.1 mRNA downstream 385287 23313643 ~ 23380719 (+) True prkcb
XR_002650601.1 other upstream 105021 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 1556864 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 1896127 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 1932305 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4001914 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 987279 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 1058851 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1482852 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2433388 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 2433388 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile