RNA id: TU142940


Basic Information

Item Value
RNA id TU142940
length 354
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G105802
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23154435 ~ 23154788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaaaattaaagggttacattgcggtactttcctatttttgctcttccaatccaacactgacaaaacgcaaataacattttgcggtgaatacgctctgatatgacagggaactgtctgcccctcctcccgtctcgctgcacacacacacagggaggaggggcagcggCTCACAGCGGCTCCACgctcacacaacgagacgaaattaactgacattttggtcaacgaataaaaacgagacgaaaatgtttggcagggacgaaatccaatcagaactgatttaggtctgtgaaaggtagggaccagttaggaagagatccaatcactgctactttagcgaaggtggagtacCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142939 lncRNA upstream 1623 23152578 ~ 23152812 (+) True G105801
TU142934 lncRNA upstream 12534 23141394 ~ 23141901 (+) True G105796
TU142931 lncRNA upstream 26281 23127955 ~ 23128154 (+) True G105793
TU142896 lncRNA upstream 226079 22925117 ~ 22928356 (+) True G105760
TU142793 lncRNA upstream 363254 22779270 ~ 22791181 (+) True G105668
TU142941 lncRNA downstream 23849 23178637 ~ 23235052 (+) True G105803
TU142943 lncRNA downstream 24494 23179282 ~ 23251816 (+) True G105804
TU143025 lncRNA downstream 235945 23390733 ~ 23397862 (+) True G105872
TU143036 lncRNA downstream 256495 23411283 ~ 23412044 (+) True G105879
TU143048 lncRNA downstream 291086 23445874 ~ 23453226 (+) True G105891
XM_007260264.3 mRNA upstream 334339 22810079 ~ 22820096 (+) True LOC103038624
XM_022674898.1 mRNA upstream 380228 22762438 ~ 22774207 (+) True LOC103039247
XM_022674896.1 mRNA upstream 465347 22671713 ~ 22689088 (+) False LOC103041008
XM_022674897.1 mRNA upstream 465347 22672164 ~ 22689088 (+) True LOC103041008
XM_022674893.1 mRNA upstream 522721 22619030 ~ 22631714 (+) True LOC103042343
XM_007260284.3 mRNA downstream 127943 23282731 ~ 23286928 (+) True LOC103045101
XM_022674906.1 mRNA downstream 137405 23292193 ~ 23305156 (+) True LOC103044794
XM_022674909.1 mRNA downstream 158844 23313632 ~ 23373618 (+) False prkcb
XM_022674908.1 mRNA downstream 158846 23313634 ~ 23390445 (+) False prkcb
XM_022674907.1 mRNA downstream 158855 23313643 ~ 23380719 (+) True prkcb
XR_002650601.1 other upstream 334339 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 1786182 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2125445 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2161623 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4231232 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 760847 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 832419 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 1256420 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 2206956 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 2206956 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile