RNA id: TU143125


Basic Information

Item Value
RNA id TU143125
length 1361
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G105940
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23580155 ~ 23586217 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACATACATTATAAATGGAAAGATCAGGCCATCCATATTgtttgcatattttatttataaacaatacCATCTTATCAGCTTAGCTCAGTCACATTTTAGGACATACAAAACTACATGCAGTGCTATTACTCCCAAGTTTGTGCTTAATGCAACACCCTCTTCCTTAAGAATCCCtgagacaataaataaatggcattttacatttcaggaaAAAAGCAAAACTAATTCAGCCGTCCATTAATTAAGACTCTTTTCATTGTGAGCGCCTTGCGTTCATTTTGTAAATTACCTTCAGTCCATGTcacataaaacataaatcagTGCCAActgatgaaagaaagaaagactaaCTAAAGAAAAACTAATCAGCTAAAGAGTTAACTGTCTAAAGCTGAGGAGATCAGTCTCGTACACATACTGCTCTACAAGGTCTTTGGAAAGTACATGGAATGCTGTTTAAAGCATAATGTTAGGAGCTGATAGGCaggaactaaaaaaataagaaggaTTGTGAAAAGTAATAGAGAATTTTAGACAGGAAAGGGTAAAAAGAACAAAGTGCCTTAAGCCTACGTTCTTAAGTGCAGATATTACAGTAAAGACAAAAAGAACTCAAAGgagaaacatttaaaagatcTCAGGCAGAAGAAGACGACGAAGAAGAAAGCATCAGCTTCAAAAGTCCTTAAGTGCAGATATTACAGTAAAGACAAAActcaaaaaggaaaagaaaatattattattgttattaataatcatgattattattaaaggCACCACTACCACATTCTTGATGCACTGATGGTCACATGCCTAGTCTggattagtagtaatagtagcacaTAGTCTGAACTGGGTTATTTTCACGCGTGTAGCTTCTCCATCAGCTTAGTGTAACActtttcagtttctgttgttgATGTATTTAAAGAAGAAATGGTGAAATGTGTAATTATGTATTTAAGGTGGGCGGTCACTTGACTCAGTCTTTAACACCGTTGTGGTCTCACCACTTTAGAGTCCAGTTCATTCATGAGgacattattttaaagaatagAGAACCGCGGTTCCTCTCTTCAGTGCAGTTTTCTCTGAGCGTTGGCACCTTCTGCGTGAATCTGACTTCCATCATGTGTGAGACCATACTGGAAGGTTCCGGGTCCTGGACTGGTTAGTATGGAGTCTTTGCAGATCTGGGCGTGTCCAGAGGTTTTGCTGGCGTAAGTTAGTCCGGGGAAGGGTAAAGCATGCAGAGGGACTAAGCTTGTTAAACCTCCAGATTGTGGAACGTTGGGGTAAGACGAGGCCTGGAGGGAGAGGGATGGAGTCGGGAGAGCTGGATCCCCACAAGAACTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143074 lncRNA upstream 83599 23494075 ~ 23496556 (+) True G105906
TU143048 lncRNA upstream 126929 23445874 ~ 23453226 (+) True G105891
TU143036 lncRNA upstream 168111 23411283 ~ 23412044 (+) True G105879
TU143025 lncRNA upstream 182293 23390733 ~ 23397862 (+) True G105872
TU142943 lncRNA upstream 328339 23179282 ~ 23251816 (+) True G105804
TU143170 lncRNA downstream 64447 23648430 ~ 23648659 (+) True G105974
TU143180 lncRNA downstream 105163 23689146 ~ 23689374 (+) True G105984
TU143186 lncRNA downstream 149438 23733421 ~ 23733782 (+) True G105990
TU143201 lncRNA downstream 286429 23870412 ~ 23890084 (+) True G106003
TU143221 lncRNA downstream 348851 23932834 ~ 23933173 (+) True G106022
XM_007238137.3 mRNA upstream 27457 23524716 ~ 23552698 (+) True chtf18
XM_022674913.1 mRNA upstream 34147 23524716 ~ 23546008 (+) False chtf18
XM_007238135.3 mRNA upstream 89950 23480456 ~ 23490205 (+) True plk1
XM_015602690.2 mRNA upstream 120640 23454456 ~ 23459515 (+) True LOC107197111
XM_015602691.2 mRNA upstream 120640 23455126 ~ 23459515 (+) False LOC107197111
XM_007238141.3 mRNA downstream 48396 23632379 ~ 23638888 (+) True LOC103035907
XM_022674918.1 mRNA downstream 386708 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA downstream 386708 23970691 ~ 24115461 (+) False gpc6
XM_007232254.3 mRNA downstream 1492953 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 1788823 25372806 ~ 25374832 (+) True LOC103022503
XR_002650601.1 other upstream 760059 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 2211902 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2551165 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2587343 20989273 ~ 20992812 (+) True G105276
TU141369 other upstream 4656952 18919060 ~ 18923203 (+) True G104656
TU143216 other downstream 331652 23915635 ~ 23923771 (+) True G106017
TU143241 other downstream 403224 23987207 ~ 23989592 (+) True G106036
TU143375 other downstream 827225 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1777761 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1777761 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile