RNA id: TU143222


Basic Information

Item Value
RNA id TU143222
length 697
lncRNA type sense_over
GC content 0.48
exon number 4
gene id G106023
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 23938395 ~ 24021234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagcagccagagtctgagagagagagagagagagagagagagagagagtacagtagatcatgctgctgcttctccatcagcagccgaattctgagagagagagtacagtaggtcatgatgctgcttctccatcagcagccggagtctgagagagagagagagagagagtacagtagatcatgctgctgcttctccatcagcagccggagtctgagagagagagagagagagagagagagtacagtagatcatgctgctgcttctccatcagcagccagagtctgagagagagagagagtacagtagatcatgctgctgcttctccatcagcagccagagtctgagagagagagtacagtagttcatgctgtttctccagcagcagccggagtctgagagagagagagtacagtaggtcattgtgatgctggttggtataggcatctgttagctgacgTATCACAGCTGAAGATCCGGCATTTTTCTCTGACTGGTAACAAGGACTTACTTATAATGATGACTGACTTTCAATAAGTCTTAACTCCAGATAGCTTTAATTAGTAACTCAATTGTCCTTAAAAAGTATCTCCAGTACCCCTAACCCAACCCCTCCTCTCCTCCAGCTACAGAACGAGTGTTGAAGAGCTAGTTTCAGATTTGGCACTTCACAGACAGTTCGCTAATGGAACTGAGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143221 lncRNA upstream 5222 23932834 ~ 23933173 (+) True G106022
TU143201 lncRNA upstream 48311 23870412 ~ 23890084 (+) True G106003
TU143186 lncRNA upstream 204613 23733421 ~ 23733782 (+) True G105990
TU143180 lncRNA upstream 249021 23689146 ~ 23689374 (+) True G105984
TU143170 lncRNA upstream 289736 23648430 ~ 23648659 (+) True G105974
TU143266 lncRNA downstream 19028 24040262 ~ 24040717 (+) True G106054
TU143230 lncRNA downstream 98546 24119780 ~ 24120495 (+) True G106026
TU143328 lncRNA downstream 99738 24120972 ~ 24121204 (+) True G106101
TU143388 lncRNA downstream 486778 24508012 ~ 24508429 (+) True G106155
TU143390 lncRNA downstream 487308 24508542 ~ 24509393 (+) True G106157
XM_007238141.3 mRNA upstream 299507 23632379 ~ 23638888 (+) True LOC103035907
XM_007238137.3 mRNA upstream 385697 23524716 ~ 23552698 (+) True chtf18
XM_022674913.1 mRNA upstream 392387 23524716 ~ 23546008 (+) False chtf18
XM_007238135.3 mRNA upstream 448190 23480456 ~ 23490205 (+) True plk1
XM_015602691.2 mRNA upstream 478880 23455126 ~ 23459515 (+) False LOC107197111
XM_007232254.3 mRNA downstream 1055702 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 1351572 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 1361638 25382872 ~ 25386300 (+) True LOC103023109
XM_022674930.1 mRNA downstream 1398306 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 1402478 25423712 ~ 25449279 (+) True LOC103025458
TU143216 other upstream 14624 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 1118299 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 2570142 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 2909405 21019038 ~ 21028990 (+) True G105312
TU142294 other upstream 2945583 20989273 ~ 20992812 (+) True G105276
TU143375 other downstream 389974 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1340510 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1340510 25361744 ~ 25369439 (+) False LOC111193563
TU144092 other downstream 3993282 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 4045118 28066352 ~ 28066983 (+) True G106673

Expression Profile