RNA id: TU143328


Basic Information

Item Value
RNA id TU143328
length 233
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G106101
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 24120972 ~ 24121204 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgtttccgtaaatgagctgctggagctccttcacagcgccaaccagcagctcagtttcctctgctgagaagcgtttgttggacacgtccaggtagctgcaccgttaaaatagcaatccgccaaagtcagagctcacctgatgaTGAACAAgagactctgattggtttattatttcatgttactaccaaaattaaccacacccatgattaattaagagaattagaagatgact

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143230 lncRNA upstream 477 24119780 ~ 24120495 (+) True G106026
TU143266 lncRNA upstream 80255 24040262 ~ 24040717 (+) True G106054
TU143222 lncRNA upstream 99738 23938395 ~ 24021234 (+) True G106023
TU143245 lncRNA upstream 117402 23999351 ~ 24003570 (+) True G106038
TU143233 lncRNA upstream 143180 23976606 ~ 23977792 (+) True G106029
TU143388 lncRNA downstream 386808 24508012 ~ 24508429 (+) True G106155
TU143390 lncRNA downstream 387338 24508542 ~ 24509393 (+) True G106157
TU143407 lncRNA downstream 416357 24537561 ~ 24537817 (+) True G106172
TU143432 lncRNA downstream 595333 24716537 ~ 24716804 (+) True G106195
TU143443 lncRNA downstream 676664 24797868 ~ 24798201 (+) True G106205
XM_022674918.1 mRNA upstream 5511 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA upstream 5511 23970691 ~ 24115461 (+) False gpc6
XM_007238141.3 mRNA upstream 482084 23632379 ~ 23638888 (+) True LOC103035907
XM_007238137.3 mRNA upstream 568274 23524716 ~ 23552698 (+) True chtf18
XM_007232254.3 mRNA downstream 955732 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 1251602 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 1261668 25382872 ~ 25386300 (+) True LOC103023109
XM_022674930.1 mRNA downstream 1298336 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 1302508 25423712 ~ 25449279 (+) True LOC103025458
TU143241 other upstream 131380 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 197201 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 1300876 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 2752719 21327192 ~ 21368253 (+) True G105357
TU142348 other upstream 3091982 21019038 ~ 21028990 (+) True G105312
TU143375 other downstream 290004 24411208 ~ 24413098 (+) True G106146
TU143503 other downstream 1240540 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 1240540 25361744 ~ 25369439 (+) False LOC111193563
TU144092 other downstream 3893312 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 3945148 28066352 ~ 28066983 (+) True G106673

Expression Profile