RNA id: TU143407


Basic Information

Item Value
RNA id TU143407
length 257
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G106172
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 24537561 ~ 24537817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgtcgccaagatagcgatgaacgtctgaacgactgttggcgtctgtctaggttgtattcagtcagtggagctcctgtgttttctgttaccaagataaacaagcaaaactccagaaatgtacctgaacacacctcatttcataaccagaacaccacgcccatcagtgtagatatattcagaagctctgctgctatttaaaccaggcaggaggaaggagtgaaaatagacttttgatggggtgtaagatagtgatGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143390 lncRNA upstream 28168 24508542 ~ 24509393 (+) True G106157
TU143388 lncRNA upstream 29132 24508012 ~ 24508429 (+) True G106155
TU143328 lncRNA upstream 416357 24120972 ~ 24121204 (+) True G106101
TU143230 lncRNA upstream 417066 24119780 ~ 24120495 (+) True G106026
TU143266 lncRNA upstream 496844 24040262 ~ 24040717 (+) True G106054
TU143432 lncRNA downstream 178720 24716537 ~ 24716804 (+) True G106195
TU143443 lncRNA downstream 260051 24797868 ~ 24798201 (+) True G106205
TU143455 lncRNA downstream 369331 24907148 ~ 24907931 (+) True G106217
TU143458 lncRNA downstream 370927 24908744 ~ 24909029 (+) True G106220
TU143491 lncRNA downstream 673762 25211579 ~ 25212076 (+) True G106248
XM_022674918.1 mRNA upstream 422100 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA upstream 422100 23970691 ~ 24115461 (+) False gpc6
XM_007238141.3 mRNA upstream 898673 23632379 ~ 23638888 (+) True LOC103035907
XM_007238137.3 mRNA upstream 984863 23524716 ~ 23552698 (+) True chtf18
XM_007232254.3 mRNA downstream 539119 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 834989 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 845055 25382872 ~ 25386300 (+) True LOC103023109
XM_022674930.1 mRNA downstream 881723 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 885895 25423712 ~ 25449279 (+) True LOC103025458
TU143375 other upstream 124463 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 547969 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 613790 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 1717465 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 3169308 21327192 ~ 21368253 (+) True G105357
TU143503 other downstream 823927 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 823927 25361744 ~ 25369439 (+) False LOC111193563
TU144092 other downstream 3476699 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 3528535 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 4178785 28716602 ~ 28720280 (+) False LOC103027743

Expression Profile