RNA id: TU143458


Basic Information

Item Value
RNA id TU143458
length 286
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G106220
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 24908744 ~ 24909029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatacattttagctaaagagcacttcagtgcactcttttcactacactgaattcatgtttgccaaataaagctaaatgttaaagacatacattaaaaaaggactgaattttattatttaccctGGGCGCACATGGATAAAGGCGAAGTggctcaattaatgtaattaacacaaacattaaaaaaataggtacacttgacatcttaaatcctcgtgcagcaatattaatgtgattttatcagctttctgagtcctaccgtccatcgtctgcactaataaccaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143455 lncRNA upstream 813 24907148 ~ 24907931 (+) True G106217
TU143443 lncRNA upstream 110543 24797868 ~ 24798201 (+) True G106205
TU143432 lncRNA upstream 191940 24716537 ~ 24716804 (+) True G106195
TU143407 lncRNA upstream 370927 24537561 ~ 24537817 (+) True G106172
TU143390 lncRNA upstream 399351 24508542 ~ 24509393 (+) True G106157
TU143491 lncRNA downstream 302550 25211579 ~ 25212076 (+) True G106248
TU143493 lncRNA downstream 304174 25213203 ~ 25213469 (+) True G106250
TU143502 lncRNA downstream 451056 25360085 ~ 25402912 (+) True G106255
TU143509 lncRNA downstream 452715 25361744 ~ 25369439 (+) False LOC111193563
TU143513 lncRNA downstream 452715 25361744 ~ 25369439 (+) False LOC111193563
XM_022674918.1 mRNA upstream 793283 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA upstream 793283 23970691 ~ 24115461 (+) False gpc6
XM_007238141.3 mRNA upstream 1269856 23632379 ~ 23638888 (+) True LOC103035907
XM_007238137.3 mRNA upstream 1356046 23524716 ~ 23552698 (+) True chtf18
XM_007232254.3 mRNA downstream 167907 25076936 ~ 25102573 (+) True slitrk6
XM_022674360.1 mRNA downstream 463777 25372806 ~ 25374832 (+) True LOC103022503
XM_015607967.2 mRNA downstream 473843 25382872 ~ 25386300 (+) True LOC103023109
XM_022674930.1 mRNA downstream 510511 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 514683 25423712 ~ 25449279 (+) True LOC103025458
TU143375 other upstream 495646 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 919152 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 984973 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 2088648 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 3540491 21327192 ~ 21368253 (+) True G105357
TU143503 other downstream 452715 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other downstream 452715 25361744 ~ 25369439 (+) False LOC111193563
TU144092 other downstream 3105487 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 3157323 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3807573 28716602 ~ 28720280 (+) False LOC103027743

Expression Profile