RNA id: TU143502



Basic Information


Item Value
RNA id TU143502
length 702
lncRNA type read_through
GC content 0.32
exon number 2
gene id G106255
representative True

Chromosome Information


Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25360085 ~ 25402912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aaagtcactaagttggcaacactgAAAATCAGTCTTCCTTGGATCACAACAATAAGAACCAGGAGAACATAATTATGGGAGGTAACCCATTACaaacactaataaataaaaacgttacCATATTTACGTTATTTTTGACGTTTATTATGCAGTTCAACACGAAAAGGCAAGGCCAATgtgaagcttttatttttcttttcacaattagttttttcattttagattgGATTGAGAAATACCCATGTGGTAATGAAAACGAAATGGCAAAAAGCCAAAAAGGGAGAGTAAGAGCAatcacaatgtaaccagaaatcacaaggatatgaaaaataatgttaaagAGGAGAGAATAGAGTTCAGGAGGGGCATGAACAGAAATGAGtaagtaaaagtctttttttttgctaattatgttactattaaatgttcttgacttggatataaaactgttataaaagaaatagtaaaacactaatgttacaatattattaatgacttcaAATAAATAGCCACAATACTGATCATAAATCCCTTATGAACAAAATACTAAGTCGTACACTCAGTTTTGTCAATGAGACATAtactcatacctgtcaagtctcgcGTTTttgccgggaaactaccgtattttactcctctttcccgccgtcctcccgtattagtattttcccgtaaatttcccgtattaatattaaaatttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143493 lncRNA upstream 146616 25213203 ~ 25213469 (+) True G106250
TU143491 lncRNA upstream 148009 25211579 ~ 25212076 (+) True G106248
TU143458 lncRNA upstream 451056 24908744 ~ 24909029 (+) True G106220
TU143455 lncRNA upstream 452154 24907148 ~ 24907931 (+) True G106217
TU143443 lncRNA upstream 561884 24797868 ~ 24798201 (+) True G106205
TU143544 lncRNA downstream 49225 25452137 ~ 25542268 (+) True G106274
TU143542 lncRNA downstream 53208 25456120 ~ 25548983 (+) True G106273
TU143521 lncRNA downstream 55903 25458815 ~ 25556234 (+) False LOC111193565
TU143519 lncRNA downstream 59595 25462507 ~ 25570821 (+) False LOC111193565
TU143520 lncRNA downstream 59595 25462507 ~ 25570821 (+) False LOC111193565
XM_007232254.3 mRNA upstream 257512 25076936 ~ 25102573 (+) True slitrk6
XM_022674918.1 mRNA upstream 1244624 23970691 ~ 24115461 (+) True gpc6
XM_022674919.1 mRNA upstream 1244624 23970691 ~ 24115461 (+) False gpc6
XM_007238141.3 mRNA upstream 1721197 23632379 ~ 23638888 (+) True LOC103035907
XM_022674913.1 mRNA upstream 1814077 23524716 ~ 23546008 (+) False chtf18
XM_022674930.1 mRNA downstream 16628 25419540 ~ 25422258 (+) True LOC111193564
XM_022674361.1 mRNA downstream 20800 25423712 ~ 25449279 (+) True LOC103025458
XM_022674362.1 mRNA downstream 81931 25484843 ~ 25519366 (+) True LOC111193460
XM_022674931.1 mRNA downstream 116759 25519671 ~ 25556012 (+) True LOC111193565
XM_007239760.3 mRNA downstream 337315 25740227 ~ 25759643 (+) True ube2f
TU143375 other upstream 946987 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1370493 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1436314 23915635 ~ 23923771 (+) True G106017
XR_002650601.1 other upstream 2539989 22810079 ~ 22820096 (+) False LOC103038624
TU142415 other upstream 3991832 21327192 ~ 21368253 (+) True G105357
TU144092 other downstream 2611604 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2663440 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3313690 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4377414 29780326 ~ 29780927 (+) True G107117

Expression Profile