RNA id: XM_022674931.1



Basic Information


Item Value
RNA id XM_022674931.1
length 1356
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC111193565
representative True

Chromosome Information


Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25458815 ~ 25570821 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CTCTTTATACAGTTTTGCTATGTGTAAACTCAGTGAAAAGTCCTGTGAGACCCTGCAGTCAGTTTTACAATCAGAAAACAACTctctgaaagagctggacctcagtagaaatgacctgcaggattcaggactGGAGAAACTGTGTGCTGGACTAAAGAGTCCTCACTGTAGACTGGAGATactcagAATTGCTTATTGTAAACTTCAGGGACCTTGCTGTAAAACTTTGGGATcagttttaaacctggaaaaGAACTCACTGAAAGaactggacctcagtaacaatgacctgcaggattccATAGAGAAACTCTCTGATGGACTCAAGaatacacactgtaaactggaaaCTCTCAGACTAGCTTTGTGTAATCTTGGGGAACAGTCCTGTGACAGTCTGGGATCAGTTTTAAAACTGGAAACCTCCTCTCTGAAAGTGCTGGATCTCAGCAataatgacctgcaggattcaggagtggagaaACTCTGTTCTgaactgaagagttcacactgtaaactggagataCTCAGGTTATCTGGTTGTATGATCACAGAGAAAGGATGTTCATCTCTGGCTTCATCTTTAAGTTCAAACCTGAAAGAACTGGATCTGACCTACAATAACCCAGGAGAGTCTGGAGTGAAAGGGCTCTCTGATAAACTGAAGGATCCACACTACAAACTCAGCACACTCaggtatgtgagtgtgtatgtaagtgtgtTGACATTGGAAAAGTACGGCTGTGATCTCACACTGGATCCAAACACAGCGTACAGAGAGCTCTCTCTGAGTGAAGAGAACaggaggatggagagaggagaGTATCAGTCGtatcctgatcatccagagagatttgatgGGTGGGATCAGGTTCTGAGTATAGAGAGAGTTActggacgctgttactgggaggctgaGTGGAGCGGAGGAGAAGCTGATGTAGCTCTGagttataaaaccatcagcaggAAAGGATTCAGTTCAGACTCTCTGTTTGGAGAGAATGAAAAGTCCTGGAGTCTGGAGATCGATAATAACAGTTACTCTGTTCATCACAATAATAACAGCACTGatctccctcctcctccctctccctctaacagagtaggagtgtatgtggactgtcccgccggcactctgtccttctacacCATCtcctctcatacacacacaccctcacacacccaaacactcacacacctacacacattcTACACCTCATTCACTGAACCGCTCTATGCTGGGTTTTATGTTTATGATGGCTCCTCAGTGCGTCTGTGTGATATAgaatagtgtgtgtttgtttatgtgtgtgtgtgagagagatggattgtgagtgatggtgtttgtgtgaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143502 lncRNA upstream 116759 25360085 ~ 25402912 (+) True G106255
XR_002650605.1 lncRNA upstream 117866 25400917 ~ 25401805 (+) True LOC103043670
TU143509 lncRNA upstream 150232 25361744 ~ 25369439 (+) False LOC111193563
TU143513 lncRNA upstream 150232 25361744 ~ 25369439 (+) False LOC111193563
XR_002650604.1 lncRNA upstream 155350 25361871 ~ 25364321 (+) False LOC111193563
TU143545 lncRNA downstream 2569 25558581 ~ 25560028 (+) True G106275
TU143565 lncRNA downstream 7582 25563594 ~ 25566426 (+) True G106289
TU143668 lncRNA downstream 154204 25710216 ~ 25710456 (+) True G106370
TU143716 lncRNA downstream 398925 25954937 ~ 25960449 (+) True G106391
TU143687 lncRNA downstream 470232 26026244 ~ 26030682 (+) True G106380
XM_022674362.1 mRNA upstream 305 25484843 ~ 25519366 (+) True LOC111193460
XM_022674361.1 mRNA upstream 70392 25423712 ~ 25449279 (+) True LOC103025458
XM_022674930.1 mRNA upstream 97413 25419540 ~ 25422258 (+) True LOC111193564
XM_015607967.2 mRNA upstream 133371 25382872 ~ 25386300 (+) True LOC103023109
XM_022674360.1 mRNA upstream 144839 25372806 ~ 25374832 (+) True LOC103022503
XM_007239760.3 mRNA downstream 184215 25740227 ~ 25759643 (+) True ube2f
XM_022674933.1 mRNA downstream 207835 25763847 ~ 26023673 (+) True LOC103038099
XM_022674393.1 mRNA downstream 519686 26075698 ~ 26078799 (+) True LOC111193484
XM_022674937.1 mRNA downstream 598405 26154417 ~ 26170123 (+) True LOC103037236
XM_022674363.1 mRNA downstream 632953 26188965 ~ 26193144 (+) True LOC103039357
TU143503 other upstream 150232 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 150232 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1106573 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1530079 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1595900 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 2458504 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2510340 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3160590 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4224314 29780326 ~ 29780927 (+) True G107117

Expression Profile