RNA id: TU143554


Basic Information

Item Value
RNA id TU143554
length 2819
lncRNA type intronic
GC content 0.40
exon number 3
gene id G106281
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25523577 ~ 25526560 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTGTTGGGAAAATCCGCACTACCCTTTACAGCGCCATTTCCAGTGCGTTCCCCCTGAATTCTTTTAAATGGTTGAGATGAGTAGAGAAGTCAAGAGGAGTCAGGATACCAAGTTTTCAGCaaatttaacagtttatttcagaaGATCTTCCGGGAACAATGCTCCGCTCAGAGAGTCAAGGAGAATGTTCTAACACATAAAGACATACACAAGATTATATAGATCATCCCACTATGGTGTGAGTGAAGAAGGTTGAACAGCCCCCTTTGGTCCCATAAACTGTATCCTATCGTGATATGACCCCGTGCCTGCCTGCCACCTACGTCTTCAGTATAATAAATCTATTGTCCTCCCGCCTGGTTCTGGCAACATAATTTCAGTAGAAGTTCCCTCCTTATCTTTGGTCTGAGGGGACGGGTCAACCTCCCTCACTCTCAAGGTCTAACTAACCACAGATGGCTACACATGTGTTTTGAAACATTCTTGTGCAAACTCAATTAAACTACATTTGTTATATGATTCTAAAGAGTACTGTGTCTGTTAACATATGATCACCAACATGAATAAAGATTACAAAGTGCTAAATAATTCCCTTTTGAATACAGGTAACATATTGATTGATTAACATATTGAGTAAACCTTATTAAAATCACTAATGGGTTATCCTGATTGGTTTTTCATTAAGTATTTTGTATGATTATAGGACaacaatgttttaacccttaattgatagtttccatgattataagacaatgttttaacctTTAAATTCTCAACAATCCCCCTGTTTAGGTGGGATAATCCCACctaaaaatcaatgttttccATCTGATACTCTGCCCCACCATCTGCACAGTCTAACAAAGGTAGAACATATGGAGGTGGTCTGTCCTGCTTCTCTTCAATCATGTTAGTGATCAGCCTGACAATCAACGCCCTAATACCTGGTACACAACAACATCCACATGTTACAAAATTCCCACAAGCACCGCAAGAGACATCAACAATGACATGATCAGAGTTTTCCACTGGCCAATATTGGATAGtgataaaagaataataaactCTCTGTTGAGGTGATTCAATAATTCAAGACTTGTTGGGCCAActtaaatttgtaatttcagaGAACAAATGAGGCTTAAACTTTTGCTAACGTAAAAAGCCAGGAAATTAGTTGCTTAATGATTTTAAGTTGTAGTGacttatttttacagtatagtGATGTTAGTTAATCAAAACACATTGTAAAGCACAAAATAATTCTATCCATATTTTGTTTGGAGTAACTGGAAATATTGCAGAGATAATGTGAATGTTTTCAAATGCTACAGCAATTTGATCAGCCAATTTATATTTAGCTCCTAGCGTCAAACATTATCCCTCTTATTTTTCCACTGGTCAGTATAACTTGGATCTAGGTTCCAACTTACCCCCGTACATGCAATGATGTCACACCTACTCCTGCATGGTACCCTGACCATACCATCCCCTCTTTGTACACCACAGAATTGCTTTAACTTTTGGACAGTGCGCAGGTAGACATCATACCCTCTTTGCCCTGATTTTGCTCCTGTGATTGATTATATCACACATATCTACTTGAAAAATGGTTGTACTACCCTTACTATAGTTTTAACTCTATTGCCCCATAGTACTGTCTCTAGTAGTCATTTGATTTTTCCCATGTGGTCCCCAATCTACAAATGCGTTTGTACCCAATTTGTCAGGCTGAGCAGGCTTGGCCAATGGATTACTACTTAGCTATCTAGTGATCATATTGTGAATTTAACCCCTACAACAATTACTGTGATTACTCCCAAAATAAGTAAGGTTGACCATTTACCCCGCGCTAGAAAAGAATTATTGCCCCTATGGTTGATACTCACCAAATCCAGCGAAGACTAACCTGTGGAAGGAATGTTTCTAATACCCAAATGTGCCACTAAGTTTAATGCTGTATGTAagttggaaaaatataaaatgcctTTAATACATAAACATGAATAATCAACTAAATCCCTCCTGTGTGTCCCTTTTCTCAGCTAAGGCTAAGTATAACCTCTCCCAGCTCCTACCGTTTTATTCCCTCTAGTCAACACACTCTTTCTGCATTGATTGACTTATACAAtacacacttTAAATAATAAGCTAAACCCTCTCTACGTTTGATTTATTTGTCACTAGGTAAAGTGGAACCCCCTTTCGACCCCTGCTGATTTTATCACTTTATTTAAGGCATAGATTTTCCGctaaaatagaataaatcaaccctcctagaaaaagaaacacaaaaatcaccaatcaatgaaaaattaaacaatacaagTGTCCATCCAATATTTTCGTctgcttttttcttctttcttcttgctTCAGGGTTCTGAGGGTAGACTACCTCAGCCCTATTCGCACGAAGAGCTTTATTCTGGCTCTTGGTGTCTGCAATATCAGTGAATGAAAAGTATGAGTTGGTGTGATAAGACTATGTGTGTTCTTTAATGAGATGTGTTTAAGAGTctctgtatgtagtgtacttTGACGCAATCGAAACGTTGCTGAGTGAGTTactccctcactttctctcctcGGTCACAGCCAGGCACTGACGGCCCCtgctgtctgctgctgctgtgggcGATTCAGCtgcccctccttcctgctgcggGCCTTCTGAGGGGGATTCAGCTGCTGTTCTCACCTCTCCCTCTGGCTCTCTAAGCGATCTCTGGGCTGTGTGGCTGCACACTGGCTCCAGTTGTACCATGTCGAACCCTTGCCTTTCAGTTGATCTGCGTACGTTGTTCTCTCAGTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143502 lncRNA upstream 120665 25360085 ~ 25402912 (+) True G106255
XR_002650605.1 lncRNA upstream 121772 25400917 ~ 25401805 (+) True LOC103043670
TU143509 lncRNA upstream 154138 25361744 ~ 25369439 (+) False LOC111193563
TU143513 lncRNA upstream 154138 25361744 ~ 25369439 (+) False LOC111193563
XR_002650604.1 lncRNA upstream 159256 25361871 ~ 25364321 (+) False LOC111193563
TU143555 lncRNA downstream 309 25526869 ~ 25527333 (+) True G106282
TU143557 lncRNA downstream 16047 25542607 ~ 25546810 (+) True G106284
TU143561 lncRNA downstream 26031 25552591 ~ 25554715 (+) True G106286
TU143545 lncRNA downstream 32021 25558581 ~ 25560028 (+) True G106275
TU143565 lncRNA downstream 37034 25563594 ~ 25566426 (+) True G106289
XM_022674362.1 mRNA upstream 4211 25484843 ~ 25519366 (+) True LOC111193460
XM_022674361.1 mRNA upstream 74298 25423712 ~ 25449279 (+) True LOC103025458
XM_022674930.1 mRNA upstream 101319 25419540 ~ 25422258 (+) True LOC111193564
XM_015607967.2 mRNA upstream 137277 25382872 ~ 25386300 (+) True LOC103023109
XM_022674360.1 mRNA upstream 148745 25372806 ~ 25374832 (+) True LOC103022503
XM_007239760.3 mRNA downstream 213667 25740227 ~ 25759643 (+) True ube2f
XM_022674933.1 mRNA downstream 237287 25763847 ~ 26023673 (+) True LOC103038099
XM_022674393.1 mRNA downstream 549138 26075698 ~ 26078799 (+) True LOC111193484
XM_022674937.1 mRNA downstream 627857 26154417 ~ 26170123 (+) True LOC103037236
XM_022674363.1 mRNA downstream 662405 26188965 ~ 26193144 (+) True LOC103039357
TU143503 other upstream 154138 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 154138 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1110479 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1533985 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1599806 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 2487956 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2539792 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3190042 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4253766 29780326 ~ 29780927 (+) True G107117

Expression Profile