RNA id: TU143668


Basic Information

Item Value
RNA id TU143668
length 241
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G106370
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 25710216 ~ 25710456 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaaagctttgggactccagagaaccacagtgattcactattattatccactaatggagaaaaaacatggaacactggtgaaccttcccaggagtgaccagccgaccaaacaaaattactccaaaagggcatgaacaactcatccaggagatcccaaaagaacccagaacaacatttaaagaactgcaggatctcactcgcctcagttaagatcagtgttaatgattcaataataagaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143519 lncRNA upstream 139395 25462507 ~ 25570821 (+) False LOC111193565
TU143520 lncRNA upstream 139395 25462507 ~ 25570821 (+) False LOC111193565
TU143565 lncRNA upstream 143790 25563594 ~ 25566426 (+) True G106289
TU143545 lncRNA upstream 150188 25558581 ~ 25560028 (+) True G106275
TU143521 lncRNA upstream 153982 25458815 ~ 25556234 (+) False LOC111193565
TU143716 lncRNA downstream 244481 25954937 ~ 25960449 (+) True G106391
TU143687 lncRNA downstream 315788 26026244 ~ 26030682 (+) True G106380
TU143777 lncRNA downstream 455660 26166116 ~ 26171801 (+) False LOC103037236
TU143794 lncRNA downstream 512680 26223136 ~ 26228689 (+) True G106446
TU143826 lncRNA downstream 574436 26284892 ~ 26285416 (+) True G106466
XM_022674931.1 mRNA upstream 154204 25519671 ~ 25556012 (+) True LOC111193565
XM_022674362.1 mRNA upstream 190850 25484843 ~ 25519366 (+) True LOC111193460
XM_022674361.1 mRNA upstream 260937 25423712 ~ 25449279 (+) True LOC103025458
XM_022674930.1 mRNA upstream 287958 25419540 ~ 25422258 (+) True LOC111193564
XM_015607967.2 mRNA upstream 323916 25382872 ~ 25386300 (+) True LOC103023109
XM_007239760.3 mRNA downstream 29771 25740227 ~ 25759643 (+) True ube2f
XM_022674933.1 mRNA downstream 53391 25763847 ~ 26023673 (+) True LOC103038099
XM_022674393.1 mRNA downstream 365242 26075698 ~ 26078799 (+) True LOC111193484
XM_022674937.1 mRNA downstream 443961 26154417 ~ 26170123 (+) True LOC103037236
XM_022674363.1 mRNA downstream 478509 26188965 ~ 26193144 (+) True LOC103039357
TU143503 other upstream 340777 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 340777 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 1297118 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 1720624 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 1786445 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 2304060 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 2355896 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 3006146 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 4069870 29780326 ~ 29780927 (+) True G107117

Expression Profile