RNA id: TU143910


Basic Information

Item Value
RNA id TU143910
length 264
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G106541
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 26769614 ~ 26769877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gccgcgcgctttgctccgctattgaagtctgtggacgctcagcgtccgcactgtttaaagcagcgctgtgaagctgcgggaatgagtgagaggaaagccgcggcgttaccagtgataagaagctgattctgaactaagttcagcgcggtgtagcgcatatttaatcagcgacatgtacacacaacagtatatatttaatcacttatttttttacattttaggggaagctgagcttcccttgcagtcttagagcaatcgccactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143847 lncRNA upstream 317166 26452208 ~ 26452448 (+) True G106486
TU143837 lncRNA upstream 459632 26309729 ~ 26309982 (+) True G106476
TU143826 lncRNA upstream 484198 26284892 ~ 26285416 (+) True G106466
TU143794 lncRNA upstream 540925 26223136 ~ 26228689 (+) True G106446
TU143777 lncRNA upstream 597813 26166116 ~ 26171801 (+) False LOC103037236
XR_002650606.1 lncRNA downstream 18563 26788440 ~ 26789793 (+) True LOC111193569
TU143928 lncRNA downstream 800110 27569987 ~ 27570191 (+) True G106555
TU143930 lncRNA downstream 801459 27571336 ~ 27571646 (+) True G106557
TU143943 lncRNA downstream 813500 27583377 ~ 27624701 (+) True G106562
TU143945 lncRNA downstream 839504 27609381 ~ 27610614 (+) True G106564
XM_022674395.1 mRNA upstream 126404 26638967 ~ 26643210 (+) True LOC111193487
XM_022674396.1 mRNA upstream 126404 26638967 ~ 26643210 (+) False LOC111193487
XM_007232550.3 mRNA upstream 254376 26511121 ~ 26515238 (+) True slitrk1
XM_022674934.1 mRNA upstream 514737 26250173 ~ 26254877 (+) True LOC111193566
XM_022674365.1 mRNA upstream 521267 26245239 ~ 26248347 (+) True LOC103039973
XM_022674939.1 mRNA downstream 818172 27588049 ~ 27604231 (+) True atic
XM_022674942.1 mRNA downstream 959636 27729513 ~ 27739098 (+) True LOC103046391
XM_022674367.1 mRNA downstream 975211 27745088 ~ 27758097 (+) True LOC111193461
XM_022674943.1 mRNA downstream 989335 27759212 ~ 27768267 (+) True arglu1
XM_022674368.1 mRNA downstream 1032207 27802084 ~ 27808084 (+) True LOC103047315
TU143503 other upstream 1400175 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 1400175 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 2356516 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 2780022 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 2845843 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 1244639 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 1296475 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 1946725 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 3010449 29780326 ~ 29780927 (+) True G107117

Expression Profile