RNA id: TU143955


Basic Information

Item Value
RNA id TU143955
length 239
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G106572
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27630943 ~ 27634210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATGGTAACGGCGCGGGCGTCTTCTGGAATCACCTTCCTTACAGTTGGATAACTGCCAGAGGTGGGCGTGGCCTCAATGAGGAATCCTGTCATTGGTTCGCCCATCTTGGTTCGCCAGACGAGCGTGATGCTGGTGTCCTTAACGTCTGAGATGCGGACGCGGCGCGGAGGGCTAATCTTCAGCCGTGGTGACCTCTCCGATCAGGGGTCGGCTGCTGAGGGAATCCTTCAGGGCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143943 lncRNA upstream 6242 27583377 ~ 27624701 (+) True G106562
TU143945 lncRNA upstream 20329 27609381 ~ 27610614 (+) True G106564
TU143930 lncRNA upstream 59297 27571336 ~ 27571646 (+) True G106557
TU143928 lncRNA upstream 60752 27569987 ~ 27570191 (+) True G106555
XR_002650606.1 lncRNA upstream 841150 26788440 ~ 26789793 (+) True LOC111193569
TU144055 lncRNA downstream 192377 27826587 ~ 27826848 (+) True G106636
TU144066 lncRNA downstream 271575 27905785 ~ 27906285 (+) True G106644
TU144068 lncRNA downstream 272746 27906956 ~ 27907211 (+) True G106646
TU144070 lncRNA downstream 278096 27912306 ~ 27914261 (+) True G106648
TU144061 lncRNA downstream 281337 27915547 ~ 27918196 (+) True G106642
XM_022674939.1 mRNA upstream 26712 27588049 ~ 27604231 (+) True atic
XM_022674395.1 mRNA upstream 987733 26638967 ~ 26643210 (+) True LOC111193487
XM_022674396.1 mRNA upstream 987733 26638967 ~ 26643210 (+) False LOC111193487
XM_007232550.3 mRNA upstream 1115705 26511121 ~ 26515238 (+) True slitrk1
XM_022674934.1 mRNA upstream 1376066 26250173 ~ 26254877 (+) True LOC111193566
XM_022674942.1 mRNA downstream 95303 27729513 ~ 27739098 (+) True LOC103046391
XM_022674367.1 mRNA downstream 110878 27745088 ~ 27758097 (+) True LOC111193461
XM_022674943.1 mRNA downstream 125002 27759212 ~ 27768267 (+) True arglu1
XM_022674368.1 mRNA downstream 167874 27802084 ~ 27808084 (+) True LOC103047315
XM_007234822.2 mRNA downstream 256508 27890718 ~ 27905645 (+) True LOC103043862
TU143503 other upstream 2261504 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2261504 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3217845 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3641351 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3707172 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 380306 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 432142 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 1082392 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 2146116 29780326 ~ 29780927 (+) True G107117

Expression Profile