RNA id: TU144066


Basic Information

Item Value
RNA id TU144066
length 501
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G106644
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27905785 ~ 27906285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattggatttatataatattcaaattttttgagattaGTTTCTAGTAAACGTTACCTCAGACAGAAGAACTGGGCTCAAGAACAACGTCCAAGTCAATCTCAaacaaagtcaaaaagaggacaaGACTACCGATTGCTTGAAGACCAAGCACTGAAGACCAAAATCAAGCACTCGAGTACTAAAACACTACATTTGCGTTTGTAGGAAAGAGCAACCTGGCCAAAAATTCTGCTAAATTATCCTTTATACTGTGGGCCAGACATTAATCAGTGCAACTAATTACACCAGCTCTACTTCTGTGCTGTACTTTGTGTGTTAGTATTATATGAAGGTGTTTGGCTGCCTCTTTAAGTGAGTGCAGAGAAGTTCCCTGCAGGTCAGTTTTATTAAGGTCAGCAAGATTTATTAAGGTGCTTAATTCTGCTGGACATTTTCTTTAGACCAAGCCTCAGTTgctgaaatatattaataaatctgTTCTGTCTGTATCTGACTATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144055 lncRNA upstream 78937 27826587 ~ 27826848 (+) True G106636
TU143955 lncRNA upstream 271575 27630943 ~ 27634210 (+) True G106572
TU143943 lncRNA upstream 281084 27583377 ~ 27624701 (+) True G106562
TU143945 lncRNA upstream 295171 27609381 ~ 27610614 (+) True G106564
TU143930 lncRNA upstream 334139 27571336 ~ 27571646 (+) True G106557
TU144068 lncRNA downstream 671 27906956 ~ 27907211 (+) True G106646
TU144070 lncRNA downstream 6021 27912306 ~ 27914261 (+) True G106648
TU144061 lncRNA downstream 9262 27915547 ~ 27918196 (+) True G106642
TU144074 lncRNA downstream 19975 27926260 ~ 27936905 (+) True G106650
TU144075 lncRNA downstream 19975 27926260 ~ 27927952 (+) False G106650
XM_007234822.2 mRNA upstream 140 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 97701 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 137518 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 147688 27745088 ~ 27758097 (+) True LOC111193461
XM_022674942.1 mRNA upstream 166687 27729513 ~ 27739098 (+) True LOC103046391
XM_022674370.1 mRNA downstream 87714 27993999 ~ 27999852 (+) True LOC111193463
XM_022674372.1 mRNA downstream 783270 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 786559 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 795727 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 796782 28703067 ~ 28723826 (+) True LOC103027743
TU143503 other upstream 2536346 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2536346 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3492687 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3916193 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3982014 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 108231 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 160067 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 810317 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1874041 29780326 ~ 29780927 (+) True G107117

Expression Profile