RNA id: TU144070


Basic Information

Item Value
RNA id TU144070
length 305
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G106648
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 27912306 ~ 27914261 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagcaggacttggcacactgccaaaaatagatcacactgtgtgtaatacatctatatatgagtttcacgttttcaactgaattactgaactaaAGTAACTTTTCTTTTCTACACAATGTAATCACATGAATGCAgctaaaagagcagaaactgtatttCTGGGCTGTATTAGCTCAGCAATATTGGCAGCAAGTTTACTAAACCAAGAAGGGTTCGTAATAAATGAGCATGATGGCATCTGTGGGAgttgaaataaacaaatattgatAACGGAATGTGTGATACCACGCTCATTTATCCTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144068 lncRNA upstream 5095 27906956 ~ 27907211 (+) True G106646
TU144066 lncRNA upstream 6021 27905785 ~ 27906285 (+) True G106644
TU144055 lncRNA upstream 85458 27826587 ~ 27826848 (+) True G106636
TU143955 lncRNA upstream 278096 27630943 ~ 27634210 (+) True G106572
TU143943 lncRNA upstream 287605 27583377 ~ 27624701 (+) True G106562
TU144061 lncRNA downstream 1286 27915547 ~ 27918196 (+) True G106642
TU144074 lncRNA downstream 11999 27926260 ~ 27936905 (+) True G106650
TU144075 lncRNA downstream 11999 27926260 ~ 27927952 (+) False G106650
TU144078 lncRNA downstream 22949 27937210 ~ 27975192 (+) True G106651
TU144091 lncRNA downstream 100255 28014516 ~ 28015174 (+) True G106661
XM_007234822.2 mRNA upstream 6661 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 104222 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 144039 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 154209 27745088 ~ 27758097 (+) True LOC111193461
XM_022674942.1 mRNA upstream 173208 27729513 ~ 27739098 (+) True LOC103046391
XM_022674370.1 mRNA downstream 79738 27993999 ~ 27999852 (+) True LOC111193463
XM_022674372.1 mRNA downstream 775294 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 778583 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 787751 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 788806 28703067 ~ 28723826 (+) True LOC103027743
TU143503 other upstream 2542867 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2542867 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3499208 24411208 ~ 24413098 (+) True G106146
TU143241 other upstream 3922714 23987207 ~ 23989592 (+) True G106036
TU143216 other upstream 3988535 23915635 ~ 23923771 (+) True G106017
TU144092 other downstream 100255 28014516 ~ 28022047 (+) False G106661
TU144107 other downstream 152091 28066352 ~ 28066983 (+) True G106673
TU144257 other downstream 802341 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1866065 29780326 ~ 29780927 (+) True G107117

Expression Profile