RNA id: TU144108


Basic Information

Item Value
RNA id TU144108
length 3045
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G106674
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28108113 ~ 28111177 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTCAGGTAATGCTGTAAAGTTCAGGAGGAGGGGGAGGTGTGGCCACTGTTGAGGACGACAACAAACAATACCGTCATGAAATGagagaaatgaataaaaaaaaagaattgagaGAAATCGTAGTTTAAACATAGCCATCACACAGTTTCACATTATACACGGGTTCGCCTGAAACTCAGGACGTTCAGGACGTTCCCACAAACACCGGGTTCTACTGATGAGGAGGTTCGGTTCTGCTAGGTTCTGTCTAGAGGAGAAATAAACAAGCACAAAGtggtttatataataaatagcgGGGGAAACACACTCGCGTCACGCGTCATTCACTAATATCCAAATGGTAACGCATGGGAGCGGTTCAGAAGGTCTTGCATCTTGCAGGAGGTCGTCTACATATACTGTACGTATTTACAGCGTATAACAAAGAGAAGGGATGAGTAAAAAGGGGAGGGGCCACAGCAAATCTTCAAAGCAGCGAGAAAACAAAAGGTTAACCCACAGAGTAAAGCTTAATACAAATAcatgaagaggaggatgaatAAGGAATAGCGAATAGAGGGTTCAATTTTCCCGATGCAGTCGCTCGGATTACATTAACACCTGTAGAGTAGCATAAAATAGAGCAAacctcccattttctccccaatttacaagaccaattagcacacgcctcctccgatacatgtaaagtcagactccgcctctttttaaactgctgctaatgctgtagcattggccagtagcatcacagcgctaacgctcggaggaaagcgcagcgactcggtgggttctgatacatcagctcacagatgcagccttgtgctgttccacatcaccctaggagtgatgaggggaaagagagagcgccatctactactgtacccacccagagagagcaagaccaactgtgctctctcagggctccggcagctgatgacaagctacatgaacaggattcgaacaagTGATCTcacaatcatagtggcagcgcttagcccgctggatcactttacttttaattcaaataaattccacttacagtatctgaaataaataaataaatatggcaAATTTGTAAtcattgaaaaatatatttgaaaaaaaaaggcctattttttttaatggctaaaTCTTTGTGGGTGGAAAAGATGTGGattgttataataaaatattaaaataatctaGAATTTGACCTTTGCTTCCAACTGGGTCCACATtttatgtaccgtattttttttactataagtaCAGAGCTATACAGGCgtttcagtttagctctccaTCACCcttgctgctgcacccagccttagtgtaaatctggaaatctaagcttcctgtaaataaacagaagctctttactctttattcactaaaatgaacagttttcaggagagaaatctgtgtagattaacagccAGCGCTTGATAAACTTGAatagaaaatgttattttcttagcttagctttacaggtctctgctgaattagaaggtaaACATGGGgagacccctgttccttactagtgtctcataatgcgccttataatctagttggccttataatgcgaaaaatacggtaaaattTACAGCAGATCGTACGACATCCATCCAATACATCCTGCCCTACACCAGTCTACtctttctgtagtttatactgAAAGGTCTTTCGTAAGCTTACGTTCAATATTATAATAAGCATTAATCCAGTGTAAATACTGCAAGCCAGTGTTTGTAGGCGTTACCGTAACCCCGGGCGACTGCACCGTGCGATGATCAACATATAATCACAATCAAGAAGCACACGAAGGAGCTGGCACTGTGCCAGACCACTACTACACACGGCGCACGTTTAGCGTAAAGGAACGGCGCAAAGGGGAAGCGTGAAAACGTTAAAAACAATCGTAAAAATCCAGAGGAAAGAGATTCACGGTATTTACAAACTCCGCCTTGTAAATGCCTCGCGGCgctctataaaaatactattCACATTtcggttttatgttttttttgtgtgtttttttttaaataatatccaCAGGTGATTCTCGGAGGAGGACGGGTCGTCCTCGTGCCCGTCACCAATGCCCTTACTTTTATTGGCTCAGATGCCTCTCACATTTCACCACTCCGATATACGCATTCTCAATAACGTGTGCAAAAAAACCCCAGTGCTTCTGCTATTCAAAAATGTATCATTAGCATATTCATTAGCGTATACAGTCTGTTGGTAACTGAACAGGGTTATTTGGCTCTGAAATCAGTTTTCGTTCCTTTTAAATAGAAAGAAGGAGTAGAATTCACAGCTCTATTTTTAAGATAGACAGTTCCCTTTCTACAGTATGTAACCAACAGTCAATGGACATTTGGCTAAGCAGTTCTTACTGCAACATAAAAGCTATGTTTACATTGGATTTTTATCAAAATCTGACTTCAGCCCTGTTTATATCTGGTATCTTATCTGGTATCTTGATTAAGTCCTGCTAAAATTTTAGCCACACGCATTTACACTTGGTAATCAAATGCAtgccatttatttattgagcaaAATGTCCCAAATATCGCATACCTGTAAGTGGCGAAAGTATGTAAACAATTCAGACCAGCAAATAATTTAGTTATTAATAATGAGGAGgagcttaaaagaaaaaaatcagactTACAAAATCTACAATCTACAGTCAGTCCGATTGTGCAGGAATGGTGGAAATTCAACACAAATGGAACCcaaggtaacttctaagcaactaaaGGCCCAATTTCTTTCACTGGATAATGTTAATCTTGGACGTTTGGCTAGGTGACAAGCACTGATGGCAACTGGAACAGTGTTTAGTGGACAAACgagaacaaaatatataattttggtCAAGATCAAGTGAGAAGCGATGTTTCAGAGTTTGGTGAAAGGAATAAACTGAATTCTAACATAAAAACCTTATCttatctgtaaaacatggtggtgggagtatcATGGTTGGTGCatctcataaaatttaaatatcattgaactttaattgctttatttaagtaaaagtaaaaagtaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144091 lncRNA upstream 92939 28014516 ~ 28015174 (+) True G106661
TU144078 lncRNA upstream 132921 27937210 ~ 27975192 (+) True G106651
TU144074 lncRNA upstream 171208 27926260 ~ 27936905 (+) True G106650
TU144075 lncRNA upstream 180161 27926260 ~ 27927952 (+) False G106650
TU144061 lncRNA upstream 189917 27915547 ~ 27918196 (+) True G106642
TU144109 lncRNA downstream 1300 28112477 ~ 28132272 (+) True G106675
TU144150 lncRNA downstream 188411 28299588 ~ 28300251 (+) True G106710
TU144148 lncRNA downstream 188639 28299816 ~ 28300251 (+) False G106710
TU144158 lncRNA downstream 274301 28385478 ~ 28386442 (+) True G106718
TU144191 lncRNA downstream 467034 28578211 ~ 28578489 (+) True G106745
XM_022674370.1 mRNA upstream 108261 27993999 ~ 27999852 (+) True LOC111193463
XM_007234822.2 mRNA upstream 202468 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 300029 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 339846 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 350016 27745088 ~ 27758097 (+) True LOC111193461
XM_022674372.1 mRNA downstream 578378 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 581667 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 590835 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 591890 28703067 ~ 28723826 (+) True LOC103027743
XM_022674952.1 mRNA downstream 674787 28785964 ~ 28791991 (+) True LOC111193571
TU144107 other upstream 41130 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 86066 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 2738674 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2738674 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3695015 24411208 ~ 24413098 (+) True G106146
TU144257 other downstream 605425 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1669149 29780326 ~ 29780927 (+) True G107117

Expression Profile