RNA id: TU144109


Basic Information

Item Value
RNA id TU144109
length 1236
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G106675
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28112477 ~ 28132272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgctctaaaaccaggtgcttcagttttattgtccaacccctgtatatagttgcacccagaagaaagCGTGGGATTGTAATGCTAATTGGAaaaattattatacatttagacTAACAtgagtaatatttatttagttacacTTACAGAAGTACGTGTtttgttttcagtgaagtttctccagcacttaggcagaagcagtattagcattagctgctaaccgcactaagcgctagctctttcgccattcagaggtgagtattgtcAGACTGTAGTTTGCTActaaccctgactagcactgctggagtaacattagcattacctgctaacagcgctaagcgctagctctttagtcgtttaaaggtgagtatatcagactaaaacaagctactgctagctaatatcgcacTGGCTTACCAggaaaacactcagggtttatCAATGTAGCGCTGTTGGCCAGCATTTAGAAGCGATAACAGTGGATAGCACCAGCAGTTAgccgttaatgctaatgctgctgctgctgcacccagccttagtgtaaatctggaaatctaagcttactgtaaataaaaggaagcactttactcacacaaataaacagttttcagaagataaatctgtgtatattaacatccagcactcgtttgactttaaaatatatatttttttaagaattgcagttttgtttatttatcttatctttacagctttacagacctgctaaattagaagggaaacatggcgacacccctgttccttactagtagtGTCGCATAACGCACCTTATAATACAAGCTCTTCCTATTGGTTGGTTCTTTTTGAgttcaaacactttttttttttgtagcatgAAAGCAATTGAAATGTATAGATTTCATGGAGGTATGTTTCTCTAAAATTGGGATAAATGCATATAAAGAGCCTTTCCTCTTAATTGAACTTGCAATAAttgtaaaaacacttaaaataaagctGCTCTTTCGTACTCAAACCTCATCTTTACATTAAATCTGCAATATAGAGCCAGAGCAACACTGTTCAGTTACCTACAAACAGGactgtccatcattttttcttCTATTATTTCAATGACCTGTTCAAAACGTTGTAAGCTTACTTACAACTTCATtactaaatatgtatatatacatacagctctggaaaaaaatcaaagcttcagtttctaaatcagttcctctgattttgctatttataggtttatgtttgagtaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144108 lncRNA upstream 1300 28108113 ~ 28111177 (+) True G106674
TU144091 lncRNA upstream 97303 28014516 ~ 28015174 (+) True G106661
TU144078 lncRNA upstream 137285 27937210 ~ 27975192 (+) True G106651
TU144074 lncRNA upstream 175572 27926260 ~ 27936905 (+) True G106650
TU144075 lncRNA upstream 184525 27926260 ~ 27927952 (+) False G106650
TU144150 lncRNA downstream 167316 28299588 ~ 28300251 (+) True G106710
TU144148 lncRNA downstream 167544 28299816 ~ 28300251 (+) False G106710
TU144158 lncRNA downstream 253206 28385478 ~ 28386442 (+) True G106718
TU144191 lncRNA downstream 445939 28578211 ~ 28578489 (+) True G106745
TU144202 lncRNA downstream 491699 28623971 ~ 28624198 (+) True G106754
XM_022674370.1 mRNA upstream 112625 27993999 ~ 27999852 (+) True LOC111193463
XM_007234822.2 mRNA upstream 206832 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 304393 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 344210 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 354380 27745088 ~ 27758097 (+) True LOC111193461
XM_022674372.1 mRNA downstream 557283 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 560572 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 569740 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 570795 28703067 ~ 28723826 (+) True LOC103027743
XM_022674952.1 mRNA downstream 653692 28785964 ~ 28791991 (+) True LOC111193571
TU144107 other upstream 45494 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 90430 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 2743038 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 2743038 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 3699379 24411208 ~ 24413098 (+) True G106146
TU144257 other downstream 584330 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1648054 29780326 ~ 29780927 (+) True G107117

Expression Profile