RNA id: TU144191


Basic Information

Item Value
RNA id TU144191
length 279
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G106745
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28578211 ~ 28578489 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catctgtgaccaagacagcaagtctttgtgatgtatcaagagccacagtatccagggtaatgtcagcataccaccaagaagaaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgatcaaatcacgacagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144158 lncRNA upstream 191769 28385478 ~ 28386442 (+) True G106718
TU144150 lncRNA upstream 277960 28299588 ~ 28300251 (+) True G106710
TU144148 lncRNA upstream 277960 28299816 ~ 28300251 (+) False G106710
TU144109 lncRNA upstream 445939 28112477 ~ 28132272 (+) True G106675
TU144108 lncRNA upstream 467034 28108113 ~ 28111177 (+) True G106674
TU144202 lncRNA downstream 45482 28623971 ~ 28624198 (+) True G106754
TU144226 lncRNA downstream 88625 28667114 ~ 28671093 (+) False G106760
TU144230 lncRNA downstream 89170 28667659 ~ 28673936 (+) False G106760
TU144233 lncRNA downstream 89170 28667659 ~ 28673936 (+) False G106760
TU144232 lncRNA downstream 91244 28669733 ~ 28673936 (+) False G106760
XM_022674370.1 mRNA upstream 578359 27993999 ~ 27999852 (+) True LOC111193463
XM_007234822.2 mRNA upstream 672566 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 770127 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 809944 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 820114 27745088 ~ 27758097 (+) True LOC111193461
XM_022674372.1 mRNA downstream 111066 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 114355 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 123523 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 124578 28703067 ~ 28723826 (+) True LOC103027743
XM_022674952.1 mRNA downstream 207475 28785964 ~ 28791991 (+) True LOC111193571
TU144107 other upstream 511228 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 556164 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3208772 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 3208772 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 4165113 24411208 ~ 24413098 (+) True G106146
TU144257 other downstream 138113 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1201837 29780326 ~ 29780927 (+) True G107117

Expression Profile