RNA id: TU144233


Basic Information

Item Value
RNA id TU144233
length 973
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G106760
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28667114 ~ 28673936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaacatttgtgaatatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaattcagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144202 lncRNA upstream 43461 28623971 ~ 28624198 (+) True G106754
TU144191 lncRNA upstream 89170 28578211 ~ 28578489 (+) True G106745
TU144158 lncRNA upstream 281217 28385478 ~ 28386442 (+) True G106718
TU144150 lncRNA upstream 367408 28299588 ~ 28300251 (+) True G106710
TU144262 lncRNA downstream 32109 28706045 ~ 28707099 (+) False LOC103027743
TU144285 lncRNA downstream 49011 28722947 ~ 28724026 (+) False LOC103027743
TU144288 lncRNA downstream 52784 28726720 ~ 28727094 (+) True G106791
TU144289 lncRNA downstream 53350 28727286 ~ 28727720 (+) True G106792
TU144292 lncRNA downstream 60359 28734295 ~ 28734971 (+) True G106795
XM_022674370.1 mRNA upstream 667807 27993999 ~ 27999852 (+) True LOC111193463
XM_007234822.2 mRNA upstream 762014 27890718 ~ 27905645 (+) True LOC103043862
XM_022674368.1 mRNA upstream 859575 27802084 ~ 27808084 (+) True LOC103047315
XM_022674943.1 mRNA upstream 899392 27759212 ~ 27768267 (+) True arglu1
XM_022674367.1 mRNA upstream 909562 27745088 ~ 27758097 (+) True LOC111193461
XM_022674372.1 mRNA downstream 15619 28689555 ~ 28692305 (+) True LOC111193464
XM_022674373.1 mRNA downstream 18908 28692844 ~ 28697096 (+) True LOC111193465
XM_022674374.1 mRNA downstream 28076 28702012 ~ 28702921 (+) True LOC111193466
XM_022674375.1 mRNA downstream 29131 28703067 ~ 28723826 (+) True LOC103027743
XM_022674952.1 mRNA downstream 112028 28785964 ~ 28791991 (+) True LOC111193571
TU144107 other upstream 600676 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 645612 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3298220 25361744 ~ 25369439 (+) True LOC111193563
TU143505 other upstream 3298220 25361744 ~ 25369439 (+) False LOC111193563
TU143375 other upstream 4254561 24411208 ~ 24413098 (+) True G106146
TU144257 other downstream 42666 28716602 ~ 28720280 (+) False LOC103027743
TU144751 other downstream 1106390 29780326 ~ 29780927 (+) True G107117