RNA id: TU144326


Basic Information

Item Value
RNA id TU144326
length 328
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G106803
representative False

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28809335 ~ 28865069 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagctatacagagacacctgagcactttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgacctttaagccAACAGTGGACATCACATGTATAGATGGGATCCCTTCCATCAGCTGTGAAGTTGAAGACAAAACCGGACTGACCTTCAGTTGGtataaaaatgggaaaaaaattgatGGAAATACTGCAAGTCTAAGAAACATTGAGAGAGATCAGGACTATGAGTGTGCTGTGGAAAAACCCATTCCAAGTGAAAAGAGTGATAAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144297 lncRNA upstream 30855 28778182 ~ 28778480 (+) True G106800
TU144296 lncRNA upstream 32298 28776546 ~ 28777037 (+) True G106799
TU144292 lncRNA upstream 74364 28734295 ~ 28734971 (+) True G106795
TU144289 lncRNA upstream 81615 28727286 ~ 28727720 (+) True G106792
TU144288 lncRNA upstream 82241 28726720 ~ 28727094 (+) True G106791
TU144337 lncRNA downstream 15237 28829299 ~ 28850608 (+) True G106807
TU144349 lncRNA downstream 139524 28953586 ~ 29063678 (+) True G106817
TU144383 lncRNA downstream 158670 28972732 ~ 28974394 (+) True G106838
TU144366 lncRNA downstream 236373 29050435 ~ 29052453 (+) True G106822
TU144361 lncRNA downstream 238469 29052531 ~ 29055183 (+) True G106819
XM_022674952.1 mRNA upstream 17344 28785964 ~ 28791991 (+) True LOC111193571
XM_022674375.1 mRNA upstream 85509 28703067 ~ 28723826 (+) True LOC103027743
XM_022674374.1 mRNA upstream 106414 28702012 ~ 28702921 (+) True LOC111193466
XM_022674373.1 mRNA upstream 112239 28692844 ~ 28697096 (+) True LOC111193465
XM_022674372.1 mRNA upstream 117030 28689555 ~ 28692305 (+) True LOC111193464
XM_022674951.1 mRNA downstream 27117 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA downstream 27118 28841180 ~ 28865221 (+) True LOC111193570
XM_022674378.1 mRNA downstream 311811 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 335003 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 394489 29208551 ~ 29238624 (+) False LOC103024513
TU144257 other upstream 89055 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 742352 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 787288 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3439896 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 966264 29780326 ~ 29780927 (+) True G107117