RNA id: TU144349


Basic Information

Item Value
RNA id TU144349
length 1652
lncRNA type inter_gene
GC content 0.43
exon number 8
gene id G106817
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 28953586 ~ 29063678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTAAGAACAGGAATTTTGGACTGATCACCCAGAAAAGTAGCACGGTTGCACAGTCCAGCAACACGAGCCAGAGCCGACCATGTAGGAGAGCTTCTATCAAAGGCGGTTCCACTCTGGTTCTCTGTGGTGTCGGCTTCATGGATCTGGTTGTCGAACCACATGTGGGCCACAGTCATCCGGTTCTGGGTCAGGGTTCCAGTCTTGTCTGAGCAGATGGTGGAAGTAGAACCAAGAGTTTCCACAGCTTCCAGATTCTTCACCAGGCAGTTCTTCTTGGCCATTCGCTTAGCGGTTAGAGTCAGACAACAGTGACTGTAGCTAGTAGACCCTCTGGTACGTTGGCTACAATGATTCCAATAAGGAAAATCACAGCTTCCAGCCAACCATAACCAAGGATGAGAGACAGGATAAAGAAGGACACGCCCAGGAAAACAGCTACACCAGTGATGATGTGGATGAAGTGCTCGATCTCAATGTTGATTGGAGTCTGTCCAACTTCAAGACTGGATGCAAGGGTAGCAATGCGACCCATCACAGTGCGATCACCGGTGTTGATGACAATTCCTCTAGCAGAACCTGTGGAAGAATGATATAACCATCACATTTCTAATTCTTGTCTCATTTACCCATTGGATCCATGCAAGcctactttacatttttaaaggcCCTAAGATATAACCCTGGGGGACTCCACAAGATATACACACTGAATGGTAGTCACACTAAATGATAAATCTAAGAATCAATAgtgttatttttacagtttatctAGTTGGCTTCATACCTTCAACACAGTTTGTGGAAAAGAACACAATGTTTCTGGTTTCCAGAGGATTGTCATTGGAGAAGTCAGGAGTTCGGGTTTGAGGTTCTGATTCACCAGTTAGAGAGGAGTTGTCCACCTGCATCCGTGTGCGGAGATAATGCGCAGGTCAGCAGGGATTCGGTCTCCGCCCTTAACCTCCACAAGGTCACCAGCCACCACCTCCTCAGCATTAATGCTCTTCTTCTCCCCGTCTCGGATTACCAGGGCTTGTGTGGGACGAGGTTCTTAAAGGACTCCATGATCTTTGAACTTTTGGCCTCTTGATAGTAGGAGAAACATCCTGTGATCATGACCACAGCAGACAGCACGATACCAAGGTACAGTTATCATTGGTTGGTTCATCTTCTGAGGCAGCCTGGATTCCATAAGCCAGAAAGCAGAGAATAGCTCCAATCCACAGCAGCGTGGAAAACCCTCCAAACAGCTGCTTGCAGAACTTCACCCATTCTGGAGTAGTTGGCGGTGGGGTCAGAGCGTTGGGTCCATCCCGTGCAAGGATTTCTTTAGCACGAGTCGCAGATAAACCCTTAAAAATAGTACgaaaaagacttttaaaagaTTTGTTATTGGACATTTTGGTTAGAAAATGTGTAGTAAACGATAAACTGTGGAAAAATCAACTTACAAAAGTTAAAATGACTATTTTCATCAAGATCACCGAgcaaaaatcttaataaataagttttttttttttatgtcacatGCTTAAAAAGTCTACTGTGTAGTTTTAGCACAAAATATGAGTTTTATTCTTTAACAAAATTGTACAAAAAGTAATGTTTTATCTTGAGAAAATGATcaatcagtaaatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144328 lncRNA upstream 88517 28812772 ~ 28865069 (+) True G106803
TU144337 lncRNA upstream 102978 28829299 ~ 28850608 (+) True G106807
TU144326 lncRNA upstream 139524 28809335 ~ 28814062 (+) False G106803
XR_002650609.1 lncRNA upstream 139535 28813405 ~ 28814051 (+) True LOC111193572
TU144330 lncRNA upstream 140654 28809335 ~ 28812932 (+) False G106803
TU144365 lncRNA downstream 440 29064118 ~ 29073452 (+) True G106821
TU144400 lncRNA downstream 15722 29079400 ~ 29093440 (+) True G106855
TU144403 lncRNA downstream 48642 29112320 ~ 29113337 (+) True G106856
TU144404 lncRNA downstream 48697 29112375 ~ 29113337 (+) False G106856
TU144405 lncRNA downstream 54818 29118496 ~ 29118746 (+) True G106857
XM_022674951.1 mRNA upstream 88361 28841179 ~ 28865225 (+) False LOC111193570
XM_022674950.1 mRNA upstream 88365 28841180 ~ 28865221 (+) True LOC111193570
XM_022674377.1 mRNA upstream 138078 28811824 ~ 28815508 (+) True LOC111193468
XM_022674952.1 mRNA upstream 161595 28785964 ~ 28791991 (+) True LOC111193571
XM_022674375.1 mRNA upstream 229760 28703067 ~ 28723826 (+) True LOC103027743
XM_022674378.1 mRNA downstream 62195 29125873 ~ 29127641 (+) True LOC111193469
XM_022674953.1 mRNA downstream 85387 29149065 ~ 29159524 (+) False LOC111193573
XM_022674957.1 mRNA downstream 144873 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA downstream 144873 29208551 ~ 29237973 (+) False LOC103024513
XM_022674956.1 mRNA downstream 144874 29208552 ~ 29241597 (+) True LOC103024513
TU144257 other upstream 233306 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 886603 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 931539 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3584147 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 716648 29780326 ~ 29780927 (+) True G107117

Expression Profile