RNA id: TU144582


Basic Information

Item Value
RNA id TU144582
length 485
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G106992
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29366686 ~ 29367170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttaaagctcaccttccgtcgttttttctttcattttaaaatgtctagttgtggtctctagtatgaatgaatgacatgtgagccgtttttgtaaaaaaaaagtgcttaggTGTCTTTGTATAGCTCTTTTTCAATgcactgttttaggggtgtgtccaaaatgactggatttcagctttgctcatgaatattcatacatgcaaacagcatgcaaatatctcttctctgattggctagaagcactgcgacgcccctccaccgctcggccgctcactgcctccccgCTCCAGTCAGCGTTGCAGCTGTAAACACTACCACATGTCTTCAGAAATACAACCGTATATGTTTGACCCTGAATCTGAGGAAGAAGGAGAGATGACAGAAGAACCGCTTCCTGATCGTTTGTCGATAAACGTTTCAGAATGGTAATATTTGCTTGTCAACTTAACGTTTTTCCTAAAATAGGTATAAAGTTAAGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144537 lncRNA upstream 43339 29322545 ~ 29323347 (+) True G106954
TU144492 lncRNA upstream 207006 29149090 ~ 29159680 (+) True LOC111193573
TU144407 lncRNA upstream 230237 29135975 ~ 29136449 (+) True G106859
TU144405 lncRNA upstream 247940 29118496 ~ 29118746 (+) True G106857
TU144403 lncRNA upstream 253349 29112320 ~ 29113337 (+) True G106856
TU144583 lncRNA downstream 196 29367366 ~ 29367681 (+) True G106993
TU144602 lncRNA downstream 36716 29403886 ~ 29404268 (+) True G107012
TU144604 lncRNA downstream 38818 29405988 ~ 29406309 (+) True G107014
TU144637 lncRNA downstream 158485 29525655 ~ 29575347 (+) True G107044
TU144660 lncRNA downstream 227868 29595038 ~ 29597014 (+) True G107056
XM_022674956.1 mRNA upstream 125089 29208552 ~ 29241597 (+) True LOC103024513
XM_022674959.1 mRNA upstream 125089 29228723 ~ 29241597 (+) False LOC103024513
XM_022674957.1 mRNA upstream 128062 29208551 ~ 29238624 (+) False LOC103024513
XM_022674958.1 mRNA upstream 128713 29208551 ~ 29237973 (+) False LOC103024513
XM_022674953.1 mRNA upstream 207162 29149065 ~ 29159524 (+) False LOC111193573
XM_022674965.1 mRNA downstream 50052 29417222 ~ 29519834 (+) False LOC103025657
XM_022674962.1 mRNA downstream 50353 29417523 ~ 29519834 (+) False LOC103025657
XM_022674964.1 mRNA downstream 50353 29417523 ~ 29519834 (+) False LOC103025657
XM_007238273.3 mRNA downstream 117372 29484542 ~ 29519834 (+) True LOC103025657
XM_022674966.1 mRNA downstream 171167 29538337 ~ 29558043 (+) True donson
TU144257 other upstream 646406 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1299703 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1344639 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 3997247 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 413156 29780326 ~ 29780927 (+) True G107117

Expression Profile