RNA id: TU144685


Basic Information

Item Value
RNA id TU144685
length 324
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G107074
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29655911 ~ 29656234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAGTCTCGGGCTCACCTCGTCAGGTCCAGCTGATTTCCCTGAGCGGAGTCTCCTCAGCGCCCCTGTGACCTGGTCTGCAGAGAGGTGGAGGGGGGAGGTGAGGGGGGGCGGACTGGATGTGCTGACAGTCTGTGAGAGGGAGACCTGAGCAGCACTCAGAAGAGGTAGGGAGGTGTCCAGTGGGGCAGAGGCTGAGGTTGCTGAGATAGCAggacagacagaagcaggtgaggatGAAACAGGGCAATCAAACCAGTTATAGAAGAGATTGAGTTCGTTCGCTCTCTCCACACCACCAGCTGTTGCACTATCACTCTTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144670 lncRNA upstream 34399 29615278 ~ 29621512 (+) True G107064
TU144662 lncRNA upstream 55327 29597258 ~ 29600584 (+) True G107057
TU144660 lncRNA upstream 58897 29595038 ~ 29597014 (+) True G107056
TU144637 lncRNA upstream 80564 29525655 ~ 29575347 (+) True G107044
TU144604 lncRNA upstream 249602 29405988 ~ 29406309 (+) True G107014
TU144686 lncRNA downstream 17862 29674096 ~ 29674334 (+) True G107075
TU144728 lncRNA downstream 27852 29684086 ~ 29684364 (+) True G107094
TU144730 lncRNA downstream 40468 29696702 ~ 29698661 (+) True G107096
TU144738 lncRNA downstream 61938 29718172 ~ 29718407 (+) True G107104
TU144740 lncRNA downstream 64392 29720626 ~ 29720867 (+) True G107106
XM_022674967.1 mRNA upstream 67789 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 67789 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 97868 29538337 ~ 29558043 (+) True donson
XM_022674964.1 mRNA upstream 136077 29417523 ~ 29519834 (+) False LOC103025657
XM_022674379.1 mRNA downstream 303 29656537 ~ 29658422 (+) True LOC111193470
XM_022674973.1 mRNA downstream 187866 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA downstream 187866 29844100 ~ 30451601 (+) False ncam2
XM_022674380.1 mRNA downstream 884027 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 1005765 30661999 ~ 30668744 (+) True LOC111193577
TU144257 other upstream 935631 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1588928 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1633864 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 4286472 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 124092 29780326 ~ 29780927 (+) True G107117

Expression Profile