RNA id: TU144730


Basic Information

Item Value
RNA id TU144730
length 1960
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G107096
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 29696702 ~ 29698661 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttaggcgcttttcagattttctatttctattttttatttttagatccataaaatgatatatttatgtGGATGAAGTGTTTTAGTAGCTCTATATTCTGCTATTAGAAGTTTTAAAAtcaccatgtaaaattataaactgctccctAGATATGATAGAGATCTGAACCTGGGATGGTCCTTTCTTTCtgaaaaggactggaaactttagaagaataaaaactattaattttataacttatttcGCAATAAAGAAGGTCTCTCAGCCTGTTCTCTCCCTATAGAATAGACCCGCTGGAGCAGATTTTCCAGAGGGAGGGGGGAGCGCTCTCAGAGTGTCCGGTTTCAGAGCGGGCTTCACCTCTGTCCCACAtaactcgccacctgattggctgacagaatGTAGGGGGGCAGAGCGGGGCTCTCAGTCTGCCCAACTACCATGGTAACACGCATGCGCAGTTTGATCGCTCCAGAACAAAGGGAAAGTCTCAGAACACAGCGCTGGAGTTTCCAATAGTTTTAATCTGCGTCGGATTTATAAGAGCGCTTCTCAGACATAAATGGGGATTATTGgggactggattgatggattttctgaTGGTTGGGTGGATTCTGAAGCCAGTGCTCTCAGGTAGGTGCTGATTCGCTCTGTTTGGGTGTGGGGGGTGTTCTGCAGGTACCCCGGGCGGATCAAAGAGCGTGTTTTTATCACAAACCGGACCGTCTAGCGCACGCTTTCAGCTCTAAAACGAAATACAGCTAAATGTGACTGAAAAGTAGAGATTcttagctttaaaatggcatattgggtgtctatattgagcctATACTTActcaaacacagccagatatgaattatgatatttttctggcccgccggcgggacAGGGCGTGTTAATACTAGAGACCTGCGCGGGACAGCATTTCCAGTCCTGCTCCcgcaaaaaaaatatgattttcagTCCCACTCCCGCCCGCAATTCCCGCATGATTCCGACGTTCGCGTTACTGCTCAAGGCAGTTCTTGTCATTGGCTTGAGGAATTAAAAGTGATGTACTTAGCTGAACACATCACTAAGCTAGCTGCAAtgacaaaatattcaaataaacagaaatatttaaccaaaataacaaataaattcttacacaaaacaaactaaaaagtaaacaattagaactaaaaaaagaagtaaCTAAACAAAACCCACCTACAGACCCAAACAAATAAACGCCAcaataaagcaaacacaactgaaagcaaacacaactgaaagcaaacacaactgaaagcaaacacaactgaaagcaaacagggCCTGCAGGCCAAGACACAAGACACAGGCCAAGGCCCTCTctttaaggaaaataaatgaataataaatcgcaaaaacaaataaaattagaaaacaaacaaactaaactaaacccaaaatacTAACGAAactataatctaacgaattgcaaaagatgaaaaataaaaacgtcaCACAAAAGtaggaaaacaataaataagtaaataataaagtaaataaactgcgTCTGGACGACGACACCAAATACAATAAATCAcccagaaacaaagaaataaacaaacaacaatgtaACGACTGGCAAAGCACCAGCTTAACCAGAACCAGCACAACGAAAGGAAGagcagctaaggttagctttCCGAGACTTTCCGTCTGCCTCACCCGCCCGCAATGAGCTTTCAAAATTTGCCCTGCGCTGCACTACTATGCATTGGGTCCAGCGGGTGCAGGTCTCTACTTTATACACAACGCACTCTGAGTTTAGTTAATCAGTTGTTTTAACTtacattatgtatatgtataaatatataaataacagccTTAAAATACGATGCAGTTTATAAATTTTtggcgattaaaaaaaaaacaaaaaaaactcgatattacaaaattacacatCGTCAAATCAACATTCACGATAATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144728 lncRNA upstream 12338 29684086 ~ 29684364 (+) True G107094
TU144686 lncRNA upstream 22368 29674096 ~ 29674334 (+) True G107075
TU144685 lncRNA upstream 40468 29655911 ~ 29656234 (+) True G107074
TU144670 lncRNA upstream 75190 29615278 ~ 29621512 (+) True G107064
TU144662 lncRNA upstream 96118 29597258 ~ 29600584 (+) True G107057
TU144738 lncRNA downstream 19511 29718172 ~ 29718407 (+) True G107104
TU144740 lncRNA downstream 21965 29720626 ~ 29720867 (+) True G107106
TU144745 lncRNA downstream 54075 29752736 ~ 29753240 (+) True G107111
TU144747 lncRNA downstream 68870 29767531 ~ 29767994 (+) True G107113
TU144758 lncRNA downstream 109914 29808575 ~ 29808815 (+) True G107121
XM_022674379.1 mRNA upstream 38280 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 108580 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 108580 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 138659 29538337 ~ 29558043 (+) True donson
XM_007238273.3 mRNA upstream 176868 29484542 ~ 29519834 (+) True LOC103025657
XM_022674973.1 mRNA downstream 145439 29844100 ~ 30451601 (+) True ncam2
XM_022674975.1 mRNA downstream 145439 29844100 ~ 30451601 (+) False ncam2
XM_022674380.1 mRNA downstream 841600 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 963338 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 973491 30672152 ~ 30711252 (+) True gart
TU144257 other upstream 976422 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1629719 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 1674655 28014516 ~ 28022047 (+) False G106661
TU143503 other upstream 4327263 25361744 ~ 25369439 (+) True LOC111193563
TU144751 other downstream 81665 29780326 ~ 29780927 (+) True G107117

Expression Profile