RNA id: TU144827


Basic Information

Item Value
RNA id TU144827
length 760
lncRNA type intronic
GC content 0.40
exon number 2
gene id G107181
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30031953 ~ 30035249 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGACCTGGATGTCCGAGGTGATAGAGGCTCACTAATCCATCTGatgggaaagtgtgtgtgtgtgtgtaggcctaTTAAAACTTTCCTGGCCTCATAACAGCTCCTTGAACTCAAGTTCAATACTCAcatcaaaccacacacacatatataaagacacacacacacacacacacacacaccttgaaCTGGACGCTTTGTGATCTAATAGACATACTTATCAATATAATGGACATCATGAACGGGCCAATACAGAGTAAACTAGTGAGAATGATGACTGACCCCAAAAACGTTATGGCaggtatacagtacaggccaaaagtttggacactccttctctttttcagtgcgttttctttattttcaagactgatatttacattgtagattctcactgaagcatcaaaactaggaatgaacacatgtggagttttatgtacttaacaaaaaaggtgaaataaccaaaaaaaaaaacatgttttatattctagtttcttcaaaatagccaccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcaagaggtggccacctgaaatgaaaagttttccaacagtcttgaaggaaggagttcccagaggtgtttattagcacttgttgcccctttgtcttcttcactctgtgctccagctcaccccaaaccctaaatctggattgggttcaggtccggtgactgtggaggttcagctcattttttgttaagtataaaactcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144823 lncRNA upstream 10823 30022901 ~ 30023644 (+) True G107178
TU144764 lncRNA upstream 202499 29831737 ~ 29831968 (+) True G107127
TU144758 lncRNA upstream 225652 29808575 ~ 29808815 (+) True G107121
TU144747 lncRNA upstream 266473 29767531 ~ 29767994 (+) True G107113
TU144745 lncRNA upstream 281227 29752736 ~ 29753240 (+) True G107111
TU144855 lncRNA downstream 58918 30094167 ~ 30097747 (+) True G107207
TU144856 lncRNA downstream 58918 30094167 ~ 30097747 (+) False G107207
TU144857 lncRNA downstream 58918 30094167 ~ 30097747 (+) False G107207
TU144859 lncRNA downstream 58918 30094167 ~ 30097747 (+) False G107207
TU144860 lncRNA downstream 58918 30094167 ~ 30097747 (+) False G107207
XM_022674379.1 mRNA upstream 376045 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 446345 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 446345 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 476424 29538337 ~ 29558043 (+) True donson
XM_007238273.3 mRNA upstream 514633 29484542 ~ 29519834 (+) True LOC103025657
XM_022674380.1 mRNA downstream 505012 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 626750 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 636903 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 1226031 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 1277491 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 253540 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1314187 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 1967484 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2012420 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 4665028 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile