RNA id: TU144919


Basic Information

Item Value
RNA id TU144919
length 451
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G107261
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30401626 ~ 30464931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgtgtgtgtgtgtgtgtcccaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcgctatctttaagaaactcctgaagacagagctcttcaaagagcacttactctcttaacacctctaacacactaactacttctaacctcatttccttcttcctctccttcactcctctatcctattactccccttgtcctccttttatccctatccaaagatgttttaccttgaaacttattttacattgtacttgactattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaatgtaatgtaatgtaaagaactccccctatcactagtgatgccccaacattatgagggtaaagactagcacacgcctcttccgacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144907 lncRNA upstream 202682 30198295 ~ 30198944 (+) True G107250
TU144899 lncRNA upstream 233502 30167318 ~ 30168124 (+) True G107243
TU144856 lncRNA upstream 303879 30094167 ~ 30097747 (+) False G107207
TU144928 lncRNA downstream 28070 30493001 ~ 30493706 (+) False G107267
TU144926 lncRNA downstream 28480 30493411 ~ 30528484 (+) True G107267
TU145013 lncRNA downstream 250249 30715180 ~ 30716606 (+) True G107342
TU145072 lncRNA downstream 267737 30732668 ~ 30732900 (+) True G107389
TU145077 lncRNA downstream 278746 30743677 ~ 30744047 (+) True G107394
XM_022674379.1 mRNA upstream 743204 29656537 ~ 29658422 (+) True LOC111193470
XM_022674967.1 mRNA upstream 813504 29563196 ~ 29588122 (+) True LOC103025432
XM_015602721.2 mRNA upstream 813504 29563196 ~ 29588122 (+) False LOC103025432
XM_022674966.1 mRNA upstream 843583 29538337 ~ 29558043 (+) True donson
XM_007238273.3 mRNA upstream 881792 29484542 ~ 29519834 (+) True LOC103025657
XM_022674380.1 mRNA downstream 75330 30540261 ~ 30547361 (+) True LOC111193471
XM_022674976.1 mRNA downstream 197068 30661999 ~ 30668744 (+) True LOC111193577
XM_022674977.1 mRNA downstream 207221 30672152 ~ 30711252 (+) True gart
XM_007237759.3 mRNA downstream 796349 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 847809 31312740 ~ 31319149 (+) True adamts1
TU144751 other upstream 620699 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 1681346 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2334643 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2379579 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5032187 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile