RNA id: TU145080


Basic Information

Item Value
RNA id TU145080
length 289
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G107397
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30760670 ~ 30790277 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtatgctgacattaccctggataccgtggctcttgatacatcaaaaagacttgctgtcttggtcacagatgcgccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtctcccataatgttgtgtgcattgcaatattaatattttgagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaataatgtgcaattaatgaagattgaacaccaggctgctccaatttagccatgaaacctaaaatcccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145079 lncRNA upstream 15039 30745431 ~ 30745631 (+) True G107396
TU145077 lncRNA upstream 16623 30743677 ~ 30744047 (+) True G107394
TU145072 lncRNA upstream 27770 30732668 ~ 30732900 (+) True G107389
TU145013 lncRNA upstream 44064 30715180 ~ 30716606 (+) True G107342
TU144926 lncRNA upstream 232186 30493411 ~ 30528484 (+) True G107267
TU145112 lncRNA downstream 123260 30913537 ~ 30913873 (+) True G107424
TU145118 lncRNA downstream 140286 30930563 ~ 30930808 (+) True G107430
TU145120 lncRNA downstream 163022 30953299 ~ 30954409 (+) True G107432
TU145136 lncRNA downstream 360721 31150998 ~ 31151574 (+) True G107446
TU145138 lncRNA downstream 363203 31153480 ~ 31153699 (+) True G107448
XM_022674977.1 mRNA upstream 49418 30672152 ~ 30711252 (+) True gart
XM_022674976.1 mRNA upstream 91926 30661999 ~ 30668744 (+) True LOC111193577
XM_022674380.1 mRNA upstream 213309 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 309069 29844100 ~ 30451601 (+) True ncam2
XM_007237759.3 mRNA downstream 471003 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 522463 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 535417 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 557024 31347301 ~ 31402273 (+) False app
XM_022674979.1 mRNA downstream 557025 31347302 ~ 31402273 (+) True app
TU144751 other upstream 979743 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 2040390 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2693687 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2738623 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5391231 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile