RNA id: TU145120


Basic Information

Item Value
RNA id TU145120
length 1111
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G107432
representative True

Chromosome Information

Item Value
chromosome id NC_035908.1
NCBI id CM008311.1
chromosome length 31403898
location 30953299 ~ 30954409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actggcttccagtcaaattccgcatagactataaaattctcctgttaacgtataaagccctacacgggctcgctcctgagtatttacgagacctcatctcctgttatgaaccaccgcgattacttagatctcagggtgctggtttattagtagttcctaagattcagaggagctctgcaggaggaagagctttctcttataaagcgcctcaactctggaataatctccccgaatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttatttagatctgccggagtcattagccacactctgataatgttttatattctctgttttacataaacccagtcaaaactaattccatctctctgccttcctccgagttactgactgcccacctgtctgacccgataccgagggatgttggaccctcaggctctcatgtcctctgtctggccagactggaagtttctgaagtcagctcttctccatccaccaccacagatcagctgctcatcatccatctcactctataagccattagtggagctgctatacacctgaatatataaaacctatgtggatgtatgaaagactttttaaaattaatttaaaagccatttgaccagtggtaggatggtcccccctttaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttccttgcctccgcgctcactgggggttctgtattatgtatattctatgtttaatgttttgcctgattctttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacaccagttgtaaaaagcgctatacaaataaatttgatttgatttgatttgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145118 lncRNA upstream 22491 30930563 ~ 30930808 (+) True G107430
TU145112 lncRNA upstream 39426 30913537 ~ 30913873 (+) True G107424
TU145083 lncRNA upstream 150452 30761705 ~ 30802847 (+) True G107399
TU145080 lncRNA upstream 163022 30760670 ~ 30790277 (+) True G107397
TU145079 lncRNA upstream 207668 30745431 ~ 30745631 (+) True G107396
TU145136 lncRNA downstream 196589 31150998 ~ 31151574 (+) True G107446
TU145138 lncRNA downstream 199071 31153480 ~ 31153699 (+) True G107448
TU145140 lncRNA downstream 208117 31162526 ~ 31163507 (+) True G107450
TU145144 lncRNA downstream 223677 31178086 ~ 31178343 (+) True G107454
TU145153 lncRNA downstream 247588 31201997 ~ 31202224 (+) True G107463
XM_022674977.1 mRNA upstream 242047 30672152 ~ 30711252 (+) True gart
XM_022674976.1 mRNA upstream 284555 30661999 ~ 30668744 (+) True LOC111193577
XM_022674380.1 mRNA upstream 405938 30540261 ~ 30547361 (+) True LOC111193471
XM_022674973.1 mRNA upstream 501698 29844100 ~ 30451601 (+) True ncam2
XM_007237759.3 mRNA downstream 306871 31261280 ~ 31300421 (+) True adamts5
XM_007237758.3 mRNA downstream 358331 31312740 ~ 31319149 (+) True adamts1
XM_007237757.3 mRNA downstream 371285 31325694 ~ 31341351 (+) True cyyr1
XM_022674980.1 mRNA downstream 392892 31347301 ~ 31402273 (+) False app
XM_022674979.1 mRNA downstream 392893 31347302 ~ 31402273 (+) True app
TU144751 other upstream 1172372 29780326 ~ 29780927 (+) True G107117
TU144257 other upstream 2233019 28716602 ~ 28720280 (+) False LOC103027743
TU144107 other upstream 2886316 28066352 ~ 28066983 (+) True G106673
TU144092 other upstream 2931252 28014516 ~ 28022047 (+) False G106661
TU143505 other upstream 5583860 25361744 ~ 25369439 (+) False LOC111193563

Expression Profile